BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923524
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 | c... 1749 0.0
> AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 |
chr5:7289703-7296344 REVERSE LENGTH=3126
Length=3126
Score = 1749 bits (947), Expect = 0.0
Identities = 1337/1518 (88%), Gaps = 55/1518 (4%)
Strand=Plus/Plus
Query 34 CTTTCGGTGACTTGTTAAGGAGTTTGTGGGCTCCAGGTGCATCAGCAGTGTCCCCAAGTA 93
|||| |||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
Sbjct 1115 CTTTTGGTGACTTGTTAAGGAGTCTGTGGGCTCCAGGTGCATCAACAGTGGCCCCAAGGA 1174
Query 94 TACTTAAAGCAAAACTTGATCGATATGCTCCTCAATTTAGTGGCTTTAATCAGCATGATT 153
| ||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1175 CATTTAAAGCAAAACTTGCTCGCTTTGCTCCTCAGTTTAGTGGCTTTAATCAGCATGATT 1234
Query 154 CGCAGGAACTTCTAGTTTTCTTGCTGGATGGACTCCACGAGGACTTAAATCGTATAAAGA 213
||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1235 CGCAGGAGCTTCTAGCTTTCTTGCTGGATGGACTCCACGAGGACTTAAACCGTGTAAAGA 1294
Query 214 CCAAGCCTTATGTGGAAGCAAAAGATGGAGATGGTCTTCCAGAGGAAGAAGTGGCCGATG 273
||||||||| ||||||||||||||||||||||| | |||||| | ||||||||| ||||
Sbjct 1295 ACAAGCCTTACGTGGAAGCAAAAGATGGAGATGGCCGTCCAGACGCAGAAGTGGCTGATG 1354
Query 274 AATATTGGCGAAATCATGTGGCTCTCAATGATTCAATAATCGTTGATTTATGCCTAGGCC 333
|||||||||||||||||||||||| ||||||||||||||| |||||| | |||| |||||
Sbjct 1355 AATATTGGCGAAATCATGTGGCTCGCAATGATTCAATAATTGTTGATGTGTGCCAAGGCC 1414
Query 334 AATTA-AAGTCAACAATAGTTTGTCCTATTTGCAAAAAGGGTTCTGTTACGTTTGATCCG 392
|| || ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1415 AA-TACAAGTCAACATTAGTTTGTCCTATTTGCAAAAAGGTTTCTGTTATGTTTGATCCG 1473
Query 393 TTCATGTACCTATCACTACCTTTGCCATGCACTTCAATGCGAACAATGGATCTAATAGTC 452
|||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||| ||||
Sbjct 1474 TTCATGTACCTATCGCTACCATTGCCATGCACATCAATGCGAACAATGGATTTAACAGTC 1533
Query 453 ATGAGTGCCGATGGGGGTAGTCTGCCTGCTT-TATTGACTGTCAACGTTCCTGAGTTTGG 511
||||||||||||||| ||||| ||||| || ||||||||||||||||||| |||||||
Sbjct 1534 ATGAGTGCCGATGGGAGTAGTTTGCCT-ATTCCATTGACTGTCAACGTTCCTAAGTTTGG 1592
Query 512 AAGATTTGAAGATCTTCAGAAGGCTCTTGTCACGGCCTGCTCTTTACAAGAGGATGAGAC 571
|| ||||||||||||||| |||||||||||||| ||||| ||||||| |||||| |||||
Sbjct 1593 AAAATTTGAAGATCTTCATAAGGCTCTTGTCACTGCCTGTTCTTTACCAGAGGAGGAGAC 1652
Query 572 TTTACTGGTTACTGAGGTATACAACAATCAAATTATTCGCTTCATAGAGGAGCCGACTGA 631
|||| |||||||||||||||||||||||| |||||||||||| | |||||||| |||||
Sbjct 1653 TTTATTGGTTACTGAGGTATACAACAATCGGATTATTCGCTTCCTGGAGGAGCCTACTGA 1712
Query 632 TTCATTAACCATAATCGGATATGGTGCCAAACTTGTCGTGTACCGGTTAAAGAAAGATGC 691
|||||||||| | ||| || |||||| ||||||||||||||| ||||||||||| |||||
Sbjct 1713 TTCATTAACCTTGATCAGAGATGGTGACAAACTTGTCGTGTATCGGTTAAAGAAGGATGC 1772
Query 692 AAACAATTCTCGTTTGATTGTGTTTACGCATCAGAAGCTGGAAGAGCAGGTTATCCT-TG 750
||||||||||| ||| ||||||| || |||||||||||||||||||||| |||| | ||
Sbjct 1773 AAACAATTCTCCTTTAATTGTGTATATGCATCAGAAGCTGGAAGAGCAGTTTAT-ATCTG 1831
Query 751 GGAAATCAAACCCAACGTGGAAGGGATTTGGAATCCCCTTGGTCTCGAGGCTTTGTGACG 810
||||||| | |||||| ||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 1832 GGAAATCTAGCCCAACTTGGAAGGCATTTGGAATCCCCTTGGTCTCAAGGCTTTGTGATG 1891
Query 811 TTGAGAATGGATCTGATGTTGAGAACCTGTACCTGAAATTGCTTAGTTCATTTAAGATGC 870
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1892 TCGAGAATGGATCTGATGTCGAGAACCTGTACCTGAAGCTGCTTAGTTCATTTAAGATGC 1951
Query 871 CTACTGAATTCTTCACTGCGAATCTTGAAGATCCGATTGAAGAAGACGCCACTGATAAAG 930
||||||||||||| || | |||||||||| | || | ||||||||| ||||||||||||
Sbjct 1952 CTACTGAATTCTTTACAGAGAATCTTGAAAACCCAACTGAAGAAGAAGCCACTGATAAAA 2011
Query 931 CAGTTACCGATGGT--T-CT--A----------C---TTCCACTGACGCGAAGGAGACTA 972
||| |||||||||| | || | | ||||||||| | |||||||||||
Sbjct 2012 CAGATACCGATGGTACTACTTCAGTTGAGGATACAAATTCCACTGATGTGAAGGAGACTA 2071
Query 973 CTGAGTCTCTTCCAGACCCTGTGTTGAGGCTTTACCTAACCGAAGACAGAGGAAACTCAA 1032
|||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 2072 CTGAATCTCTTCCAGATCCTGTGTTGAGGCTTTACCTCACCGACGACAGAGGAAACTCGA 2131
Query 1033 TACAATCTGAAATATTGAAAGAAAAGCCTTTAAATAGTAAATCCAAGGTGGT-GAATGTG 1091
|| || ||||||| ||||||||||||||| |||||| || |||||| ||| |||||||
Sbjct 2132 TAGAAGCTGAAATGTTGAAAGAAAAGCCTGTAAATA--AA-TCCAAGC-GGTTGAATGTG 2187
Query 1092 CTTGCACGTTGGCCAGTAAAAGAGCTAGACGCTTATGATACTTGTCTTCTGAGCTACTTA 1151
|||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||
Sbjct 2188 CTTGCACGTTGGCCTGTAAAAGAGCTTGACGTTTATGATACTTGTCTTCTGAGCTCCTTA 2247
Query 1152 CCTGAGGTTTCCAAATTTGGAACTAAGAGACCCCAGGAAGAATCTGTTTCACTTGACAAG 1211
|||||||||||||||| |||||||||||||||||| | ||||| ||||| ||| ||||
Sbjct 2248 CCTGAGGTTTCCAAATCTGGAACTAAGAGACCCCA--A-GAATCCGTTTCGCTTTTCAAG 2304
Query 1212 TGCCTTGAAGCATACTTGGCGGAGGAGCCTCTTGGTCCTGATAACATGTGGGATTGTCCT 1271
||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2305 TGCCTTGAAGCATTCTTGACGGAGGAGCCTCTTGGTCCTGATGACATGTGGTATTGTCCT 2364
Query 1272 GGGTGCAAA-AAGAAGAGGCAAGCCATTAAAAAGTTGGATCTGTGGAGGTTGCCAGAGAT 1330
||||||||| || | ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2365 GGGTGCAAAGAACACC-GGCAAGCCATTAAAAAGTTAGATCTCTGGAGGTTGCCAGAGAT 2423
Query 1331 CCTGGTAATTCATCTGAAGAGGTTTTC--A---C---T----GAATAACAAGCTGGAGG- 1377
|||||| |||||||||||||||||||| | | | ||| |||||||||||||
Sbjct 2424 CCTGGTTATTCATCTGAAGAGGTTTTCGTATAGCCGGTTTATGAAGAACAAGCTGGAGGC 2483
Query 1378 ATGATGTGGACTTCCCGCTAGATGATCTTGATCTATCAAGCTACATCTCCTACAAGAATG 1437
|| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2484 AT-ATGTGGATTTCCCGCTAGATAATCTTGATCTATCAAGCTACATCTCCTACAAGAATG 2542
Query 1438 GTCAGACT---TATCGCTACATGCTATAT----TTAGCAATCACTGTGGAAGCATGACAG 1490
||||||| ||||| |||||||| ||| |||||||||||| ||| |||||| ||
Sbjct 2543 GTCAGACAACATATCGTTACATGCTCTATGCGATTAGCAATCACTATGGGAGCATGGGAG 2602
Query 1491 GTGGTCATTACACTGCAT 1508
||||||||||||||||||
Sbjct 2603 GTGGTCATTACACTGCAT 2620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74397207690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5