BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923526
Length=2872
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50730.1 | Symbols: | unknown protein; Has 218 Blast hits t... 4120 0.0
> AT1G50730.1 | Symbols: | unknown protein; Has 218 Blast hits
to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa
- 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes
- 42 (source: NCBI BLink). | chr1:18795210-18802189 FORWARD
LENGTH=2928
Length=2928
Score = 4120 bits (2231), Expect = 0.0
Identities = 2530/2672 (95%), Gaps = 29/2672 (1%)
Strand=Plus/Plus
Query 1 ACAACGAGAAGCACAAAGCCATGGAGTTGGAATTCCGGCGTCGCGACTATGGAGCTACAC 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ACAACGAGAATCACAAAGCCATGGAGTTGGAATTCCGGCGTCGCGACTATGGAGCTACAC 105
Query 61 ATGAATCTCAATTTCTTCCTCGGTCAGAAGCTCTAAAGCATCCTCTTTCCTCTACACTTG 120
|| ||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 106 ATAAATCTCAATTTCTTCCTCGGTCACAAACTCAAAAGCATCCTCTTTCCTCTACACTTG 165
Query 121 CTTCCCGTCAACAACAGGCTAAAACTGTCAGAGGTAGCGATCTTGACTTCTTTGATCCGT 180
|||| ||| | |||||||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 166 CTTCTCGTGACCAACAGGCTAAAACTGTCAGAGGTCGCGATCTTCACTTCTTTGATCCAT 225
Query 181 TGCGGGGATTGGATGTGAATGCTTCTGCAGAAGAGAAGGTTGAAGATACTTCTATATCCA 240
|| |||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 226 TGAGGGGCTTGGATGTGAATGCTTCTGCTGAAGAGAATGTTGAAGATACTTGTATATCCA 285
Query 241 TTGAAGCTGTAACTCAGGATCTGATTAAGGAGTGGAAATCACTTAAAAGAGTCTTAATGC 300
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 286 TTGAAGCTGTAACTCAGGATCTGATAAAGGAGTGGAAATCACTTAAAAGAATCTTAATGC 345
Query 301 AGCGGTTTCCTGTCTCCAAACTTATACTTTACTTTACTCAATCAACAGTTGAGGCCCCTT 360
||||||||||||||||||||||| | |||| ||||||||||||| |||||||| ||||||
Sbjct 346 AGCGGTTTCCTGTCTCCAAACTTCTGCTTTGCTTTACTCAATCAGCAGTTGAGTCCCCTT 405
Query 361 CTGCTCTTTCCCATTCGGAGGAAACCGGTAGCGAACAAACTTCTCTGGAAGAGCCGGCCA 420
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 406 CTGCTCTTTCCCATCCGGAGGAAACTGGCAGCGAACAAACTTCTCTGGAAGAGCCGGCCA 465
Query 421 AAATAATCAACCAACAGGAATACATAGCCAAAGTGCATGAGCTAAGAGATGGAATTAAAT 480
||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 466 AAATAATCAGCCAACATGAATATATAGCCAAAGTACATGAGCTAAGAGATGGAA-TAAAT 524
Query 481 -GCGCTTGGCAGGCTGAAGATCGAGTAACATCGTTGAAGTTATCAATAAAGGTCACAAAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AGCGCTTGGCAGGCTGAAGATCGAGTAACATCGTTGAAGTTATCAATAAAGGTCACAAAG 584
Query 540 CTTCTGATGGATACAACAGTTTTGCAGTTTTATCCTACAGTCTTTGTCATTGTCACTGAC 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 585 CTTCTGATGGATACAACAGTTTTGCGGTTTTATCCTACAGTCTTTGTCATTGTCACTGAC 644
Query 600 ATGCTAGATATGCTTGGGGATATGGTGTGGGAACGGATCAAACAGAAAGCAGAACTTGAT 659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 645 ATGCTAGATATGCTTGGGGATATGGTGTGGGAGCGGATCAAACAGAAAGCAGAACTTGAT 704
Query 660 GTAGATGGAACAGTGATCT--G-C-T-CC--T--TA----CC-----G--A-AGAGACTT 698
|||||||||||||||||| | | | || | || || | | ||||||||
Sbjct 705 ATAGATGGAACAGTGATCTGCGCCTTACCGATGATATCTGCCTTGAAGCAAGAGAGACTT 764
Query 699 GCTATAACTGGTTTTGCAAAGTTGGTTCTGTTCGAGAACTTCTCCCTCGCATGTAAAACC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 765 GCTATAACTGGTTTTGCAAAGTTGGTTCTGTTCGAGAACTTCTCCCTCGCATGTAAAGCC 824
Query 759 TCTATCAATTATTA-TTTTCTTATTCTCCCTACCTTCCTCTGCCTTAGCTTTGGCTTTTC 817
| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 825 -CCATCAATTATTATTTTTCTTATTCTCCCTACCTTCCTCTGCCTTAGCATTGGCCTTTC 883
Query 818 TTTGTATGCCCATAGTTATCTGGAGCTTGCGATCTTGCCTTGCTGGCGTTTCCTCATTAA 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TTTGTATGCCCATAGTTATCTGGAGCTTGCGATCTTGCCTTGCTGGCGTTTCCTCATTAA 943
Query 878 TCAACCCATGGAAGTTCTGGATCGTTTAGTCATGATGGTGAGAGGTCTCGCAGATCCACT 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TCAACCCATGGAAGTTCTGGATCGTTTAGTCATGATGGTGAGAGGTCTCGCAGATCCACT 1003
Query 938 GGCATCTTTGTATTGTCGCCTTTATATGGTGCATCGCATGCAGAAGTTCGGCTTCTGCAA 997
| |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1004 GACATCTTTGTATTGTCGTCTTTATATGGTGCATCGCATGCAGAAGTTTGGGTTCTGCAG 1063
Query 998 TTCTGGATATTTAATAAAATGCATCAAGGATATTGAAGATGTATTAACACCTGTTTTAGT 1057
||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1064 TTCAGGATATTTAATCAAATGCATCAAGGATATTGAAGATGTATTGGCGCCTGTTTTAGT 1123
Query 1058 GGACAAGGAGGGGTATTCCTATATTACAGACGACAAAAAGTTGCTTTTTAGTTTGATGGA 1117
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1124 GGACAAGGAGGGGTATTCCTATATTACAGACGACAAAAAGTTACTTTTTAGTTTGGTGGA 1183
Query 1118 ACCAGCCATCGAGTATATAGTGAAATGCTTATTTCTAACTGGACGTCAGGAGAACAATGT 1177
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1184 ACCAGCCATCGAGTATATAATGAAATGCTTATTTCTGACTGGACGTCAGGAGAACAATGT 1243
Query 1178 CTTGAGCATGCTTGAGGAGCTTGGATTTGGAAGGAACAAATTTCAGTCATCTTGCAACTC 1237
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1244 CTTGGGCATACTTGAGGAGCTTGGATTTGGACGGAACAAATTTCAGTCATCTTACAACTC 1303
Query 1238 TTCGCATGTGTCCATTTTACTTCATCATCTACTCAAGGAACTTCCATCTGAATTAGTTAT 1297
||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 1304 TTCGCATGTGTCCATTTTACTTCATTATTTACTCAAGGAACTTCCGTCTGAATTAGTTAG 1363
Query 1298 TTCACTAACTACGGAGATCCTGGATATGATTAAATGCAGCAATGATTGTTCCTTTAGTCA 1357
||||||| | | ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1364 TTCACTAGCAATGGAGATCTTGGATATGATTAGATGCAGCAATGATTGTTCCTTTAGTCA 1423
Query 1358 GGTTTTGAATTATAGGTTA-TTGGGAAATAAACTGTCTGAAGGGAAATCTCAAGAAGGTT 1416
||||||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||
Sbjct 1424 GGTTTTGAATTATAGGTTACTTGG-AAATAGATTGTCTGAAGGGAAATCTCAAGAAGGTT 1482
Query 1417 TTCTCAGTTCACTCATTGATGAAGTTATTCAGGCCGCTTCCCAGTATCAGTCACTGTATG 1476
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1483 TTCTCAGTTCACTCATTGATGAAGTTATTCAGGCTGCTTCTCAGTATCAGTCACTTTATG 1542
Query 1477 ACTACTTAAGAATTATGGACGCATATGTGGATCTTATGTTGCAGAACAAGATGGAAAATC 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 ACTACTTAAGAATTATGGACGCATATGTGGATCTTATGTTGCAGAACAAGATGGAAAATC 1602
Query 1537 ATCTGGATGCTCTCTTGGATGATATTGTAAATCTAGCTCGCGAAAAGTTTCTTTCTGAAG 1596
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1603 ATCTGGATGCTCTCTTGGATGATATTGTAAGCCTAGCTCGCGACAAGTTTCTTTCTGAAG 1662
Query 1597 AAGAACAAGCAAGTTTGCAATCCATAATTTTGAAGCTGCTCGCTCATTTCGAGAACTTGC 1656
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1663 AAGAACAAGCAAGTTTGCAATCCATAATTTTGAAGCTGCTCTCTCATTTCGAGAACTTGC 1722
Query 1657 AAGAAGTACTTCCTCTGAATCATTTCATCGAGATTCTGGATCTTATGTCTGGGACTTCAA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 AAGAAGTACTTCCTCTGAATCATTTCATCGAGATTCTGGATCTTATGTCTGGGACTTCAA 1782
Query 1717 AGAGCAGTGTAAACATGCATCTTCTTAACATGGGTACAAGGAATGGCTGCATTTGTGATT 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 AGAGCAGTGTAAACATGCATCTTCTTAACATGGGTACAAGGAATGGCTGCATTTGTGATT 1842
Query 1777 CAACAACAGTGCAATTTCTTTTTGAAGTTTCTCAGGCTCTTTATGATGCTACAGATTTCG 1836
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 CAACAACAGTGCAATTGCTTTTTGAAGTTTCTCAGGCTCTTTATGATGCTACAGATTTCG 1902
Query 1837 TTCACATAAAGGATGATGACAATAGACAGACATCACATTTAATTTCTCGTTTTGTGGAGA 1896
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1903 TTAACATAAAGGATGATGACAATAGACAGACATCACATTTAATTTCTCGTTTTGTTGAGA 1962
Query 1897 TGGTTGACTATGGGGCAGAAATGGAACGCCATTTGAT-GTTTTTGGCAGAGTGTCGTGAG 1955
|||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 1963 TGGTTGACTATGGGGCAGAAATGGAACGCCATTT-ATTGTTTTTGGCGGAGTGTCGTGAG 2021
Query 1956 GCCTTTAATGGGATACATGAACTTAAGGAGACACTTGTCCGTTCAAGCAACACCTTAGCA 2015
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2022 GCCTTTAATGGGATACATGAACTTAAGGAGACACTTGTTCGTTCAAGCAACACCTTGGCA 2081
Query 2016 GTAAAAGCACTGAAAGCAGGAAAGAAGCATACCAACTTTGTAAAATCTTGCCTAGCATTT 2075
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2082 GTAAAAGCACTGAAAGCAGGAAAGAAGCATATCAACTTTGTTAAATCTTGCCTAGCATTT 2141
Query 2076 AGCGAAGTGACCGTCCCATCTATTTCATCTCCCACGAAACACTTAAATCTTTATCTTGAA 2135
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 AGCGAAGTGACCATCCCATCTATTTCATCTCCCACGAAACACTTAAATCTTTATCTTGAA 2201
Query 2136 ACTGCTGAGGTTGCTCTTTTAGGTGGTTTGATTTCTCATTCAGACGGACTGGTCATGTCA 2195
|||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2202 ACTGCTGAGGTTGCACTTTTAGGTGGTTTGATTTCTCATTCAGATGAACTGGTCATGTCA 2261
Query 2196 GCTGTTGAGTATCTAGAGAATGTAGCGGTAACAGATGGTTTAAAATCAATTGACGTAGAT 2255
||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||
Sbjct 2262 GCTGTTGAGTATCTAGAGAATGTAGTGCTGACAGATGGTTTAAAATCAATTGATATAGAT 2321
Query 2256 AGTATGGCCTCGGTTGTATGCAAATTGTGCAGCCTCTTGGTAATGGTCCCAGGTCATCCC 2315
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2322 AGTATGGCCTCGGTTATATGCAAATTGTGCAGCCTCTTGGTAATGATCCCAGGTAATCCC 2381
Query 2316 GAGAAAGGAGTGATGGAGATCCTTAAAAGTATTTTCTCTGCTACTTGTTCTAGTTCATGG 2375
|||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 2382 GAGAAAGGCGTGATGGAGATCCTTAAAAGTATCTTCTCTGCTACTCGCTCTAGTTCATGG 2441
Query 2376 GCAACGCCGAGATTAAAGGTGAAGATATTCTGTGCTATAATGTCACTGTTGTCAACACTT 2435
||||| | |||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2442 GCAACACTGAGAGTAAAGGTGAAGATTTTCTGTGCTATAATGTCACTGTTGTCGACACTT 2501
Query 2436 TCTCAGGACAATCTGCCTTACCATTCTGCCAATCCAGAGATAATTGGAAATGATTTGTTG 2495
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2502 TCTCAGGACAATCTGCCTTACCATTCTGCCAATCCAGAGATAATTGGAAATGAATTGCTG 2561
Query 2496 TTCTTTGGTGATTCATCATACAAGCAGAAACTTGTCTCGTGTAGTCAGTTCGTTCTAAGT 2555
||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 2562 TTCTTTGGTGATTCATCATACAAGCAGGAACTTGTCTCGTGTACTCAGTTAGTTCTAAGT 2621
Query 2556 GAGCTATTAGATGCTATTGAGCAAGAGTCTTCACAGATTGCTCGGGGGAATATGGCCCTT 2615
|| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct 2622 GAACTATTAGATGCTATTGAGCAAGAGTCTTCACAGATTTCTCGGGGGAACATGGCGCTT 2681
Query 2616 GAAGCTTGCAATTGCATATCATTAGCACTAGT 2647
|||||||||||||||||||||| |||||||||
Sbjct 2682 GAAGCTTGCAATTGCATATCATCAGCACTAGT 2713
Score = 196 bits (106), Expect = 8e-49
Identities = 122/130 (94%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 2741 GATGAATGAGAAAGTCACAGAACTTTGCTTGAGACTGCTGGAAACAGCAAAAGATTGTTT 2800
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2714 GATGAATGAGAAAGTCAAAGAACTTTGCTTGAGACTGCTGGAAACAGCAAAAGGTTGTTT 2773
Query 2801 GGGTGCCAACGACAGGTACACCGAGTCGACTAAGAAATCACTCCAACTATGATACACCGA 2860
||||||||| |||||||||| ||| |||||||||||||||||||| ||| ||||||||||
Sbjct 2774 GGGTGCCAATGACAGGTACATCGAATCGACTAAGAAATCACTCCAGCTAAGATACACCGA 2833
Query 2861 GTCAATGTTA 2870
|| |||||||
Sbjct 2834 GTGAATGTTA 2843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142724952835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5