BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923528

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50740.1 | Symbols:  | Transmembrane proteins 14C | chr1:188...   532    7e-151


> AT1G50740.1 | Symbols:  | Transmembrane proteins 14C | chr1:18807672-18809004 
FORWARD LENGTH=788
Length=788

 Score =  532 bits (288),  Expect = 7e-151
 Identities = 366/403 (91%), Gaps = 8/403 (2%)
 Strand=Plus/Plus

Query  7    AACCCAGCTCGAG-----AATGCACGATTTCTGCTTCACTATCCCGTACGGGATGCTAT-  60
            |||||||||||||     |||||||||||||||||||||||||||||||||||| || | 
Sbjct  171  AACCCAGCTCGAGAATATAATGCACGATTTCTGCTTCACTATCCCGTACGGGATCCT-TC  229

Query  61   TCATCGTCGGAGGATTTATCGGATATTTGAAGAAAGGAAGTATTGCATCTCTCGCCGGAG  120
            | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  230  TGATCGTCGGAGGATTTATCGGGTATCTGAAGAAAGGAAGTATTGCATCTCTCGCCGGAG  289

Query  121  GTGCAGGCACTGGATTGCTTGTCGTGCTCGCTGGATTCATTAGCCTTAAAGCTTTCGAGA  180
            | ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct  290  GAGCAGGCACTGGATTGCTTGTCGTTCTCGCTGGTTTCATCAGCCTTAAAGCTTTCGAGA  349

Query  181  AGAAGAAGACTTCCTCACTCGCAACTGTTCTCCAAACAGTCATTGCAGCTGCTCTTACAT  240
            |||||||||| || | |||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct  350  AGAAGAAGACATCGTTACTCGCTACTCTTCTCGAAACAGTCATTGCAGCTGCTCTCACAT  409

Query  241  TTGTCATGGGACAACGTTTCTTGCAAACTCAGAAGATTATACCGGCTGGTTTGGTTGCTG  300
            |||||||||||||||| |||||||| |||||||||||||| || |||| |||||| ||||
Sbjct  410  TTGTCATGGGACAACGGTTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTG  469

Query  301  GAATCAGTGCTATCATGACCTGTTTCTATGTATTCAAGATCGCGACTGGTGGCAACCACA  360
            ||||||||||| ||||||| |||||||| |||| ||||||||| ||||| ||||||||||
Sbjct  470  GAATCAGTGCTCTCATGACTTGTTTCTACGTATACAAGATCGCAACTGGCGGCAACCACA  529

Query  361  TACCACCGAAAGCTGAATGAT-AGTGTTATGTACTCCGGTTGT  402
            ||||||||||||||||||||| ||||||||  |||||||||||
Sbjct  530  TACCACCGAAAGCTGAATGATTAGTGTTATACACTCCGGTTGT  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5