BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923530

Length=1099
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50820.1 | Symbols:  | Aminotransferase-like, plant mobile d...   346    3e-94


> AT1G50820.1 | Symbols:  | Aminotransferase-like, plant mobile 
domain family protein | chr1:18833275-18834861 REVERSE LENGTH=1587
Length=1587

 Score =  346 bits (187),  Expect = 3e-94
 Identities = 303/358 (85%), Gaps = 12/358 (3%)
 Strand=Plus/Plus

Query  10    ACAGCTCGAAAATGGACAGTTTTGAGTGGCGTCCCTACACAAAAACTGTGAAAAACTGGG  69
             ||| ||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct  926   ACAACTCCAAAATGGATAGTTTTGAGTGGCGCCCCTACACTAAAACTGTGAAAAACTGGG  985

Query  70    AATTTT-CTCAG-TTTTACCCGGAGGA-AG-ATATGTGTGTTCCAGTTTGTCCGAGTCTT  125
              ||||| ||| | ||||| || || || || | ||| | || || ||| |||| |  |||
Sbjct  986   -ATTTTCCTC-GATTTTATCCTGA-GAGAGCA-ATGCGGGTGCCTGTTGGTCCCAACCTT  1041

Query  126   GATGAAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAGCTTGTTGGCATTAAA  185
             ||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||| | 
Sbjct  1042  GATGATGAATTTATCTCCTTTGCTCGATGCATCAAGGTGTCTGAGCTTGTTGGTATTGAC  1101

Query  186   AAAGTGGAGCATTACTT-CCCAAATAGAGTGGCTACACAGTTTGGAATGCTTCAGGATGT  244
             |  |||||||||||||| ||||| | |||||||| |||||||||| |||| ||| |||||
Sbjct  1102  AGTGTGGAGCATTACTTTCCCAA-TCGAGTGGCTTCACAGTTTGGGATGCGTCAAGATGT  1160

Query  245   TCCTTCTCCTGTTGAC-AGGAACAACCTCTCACGGGAGGCAGCTTGGAATGATTATGATA  303
             || || ||||||| || || || ||| ||||||| || ||||||||||||||||| || |
Sbjct  1161  TCATTGTCCTGTTAACCAGAAAAAAC-TCTCACGTGATGCAGCTTGGAATGATTACGACA  1219

Query  304   AGCCTATTGATGATTTGACATTACACATTTCTTCCCGTTCTGCAATACCTCGTGTTAC  361
             |||||||||||| ||||||| || ||||| ||||||||||||||||| || |||||||
Sbjct  1220  AGCCTATTGATGGTTTGACAATATACATTCCTTCCCGTTCTGCAATATCTTGTGTTAC  1277



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53865184785


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5