BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923533 Length=718 Score E Sequences producing significant alignments: (Bits) Value AT1G50790.1 | Symbols: | Plant mobile domain protein family | ... 610 6e-174 AT1G50800.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 150 2e-35 AT1G48145.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 115 5e-25 > AT1G50790.1 | Symbols: | Plant mobile domain protein family | chr1:18824050-18826488 REVERSE LENGTH=2439 Length=2439 Score = 610 bits (330), Expect = 6e-174 Identities = 453/511 (89%), Gaps = 14/511 (3%) Strand=Plus/Plus Query 209 TGTTGTATCAGCACCAGAGACAAGTCTCTGTGATGTTGAGCTTAATGTATATGGAAGCAA 268 ||||||||||||||||||||||| | | | || ||| | |||||||||||| ||| Sbjct 1836 TGTTGTATCAGCACCAGAGACAA-TGAC-ATTCTG-TGA---TGATGTATATGGAAACAA 1889 Query 269 TGCAGAGAAGAAGACTATGATCGATGATGACAACGAGGAACCAAAGTGTTTGCCCCATGA 328 |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct 1890 TGCAGAGAAGAAGACTATGATCGATGATGACAGCGAGGAATTAAAGTGTTTGCTCCATGA 1949 Query 329 AGATGGTACCATAACTAGAGAAATGGTGAGATCAGATAAGAAGTGTTGCAGTGAAGCTGA 388 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1950 AGATGGTACCATAACTAGAGAAATGGCGAGATCAGATAAGAAGTGTTGCAGTGAAGCTGA 2009 Query 389 GAAGGAAGATGCTGATGGAAGGATCAATGAGAAGGTGCTAGCATTAAAGGCAGACAACAA 448 ||||||||||||||||||| |||||| ||| ||||| ||||||| ||||||||||||||| Sbjct 2010 GAAGGAAGATGCTGATGGAGGGATCAGTGACAAGGTTCTAGCATCAAAGGCAGACAACAA 2069 Query 449 AATATCCAAACCTCATCAAAAGCTTGCTTCTGGATGCGCTAATGGAGATAAAACAAGCAA 508 || ||| | ||| ||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 2070 AAAATCGATCCCTTATCAAAAACTTGCTTCTGGATGCGCTAATGGAGATGAGACAAGCAA 2129 Query 509 AGCATATCAGCGTAAGGTTCTAAAGCCATCTGATGGTGATCAGGGACAGGCTTGTTTGCG 568 ||||||| ||| |||||| || |||| |||||||| |||||| || |||||||||| Sbjct 2130 AGCATATAAGCCTAAGGTACTGAAGCGGTCTGATGGAAATCAGGCTCATGCTTGTTTGCT 2189 Query 569 TCATGGA-GATGGCATCGGAAGTGAAGAAACTATGAAATCCAATGAGCAGTTAAAGGTTT 627 || || | ||||| ||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 2190 TCCTG-ATGATGGAATCAGAAGTGAAGAAACTATGAAATCCAACGAGCAGTTAAAGGTTT 2248 Query 628 TTGAAAAGAGAAACAATGATTTGGGTGAGGGTGAT----A-A-TGACACCACTGAAAAGA 681 ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 2249 TTGAAAAGAGAAACAATGATTTGGGTGAGGGTGATGTTGATAATGACACCACTGAAAAGA 2308 Query 682 GATTTCAAAAGCTGTAGGTGCTGGCATTGTC 712 ||| |||||||||| | |||||||||||||| Sbjct 2309 GATCTCAAAAGCTGAATGTGCTGGCATTGTC 2339 > AT1G50800.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Plant mobile domain protein family (TAIR:AT1G50790.1); Has 38 Blast hits to 34 proteins in 9 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 26; Viruses - 1; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:18826909-18828338 REVERSE LENGTH=684 Length=684 Score = 150 bits (81), Expect = 2e-35 Identities = 131/154 (85%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 548 TCAGGGACAGGCTTGTTTGCGTCATGGA-GATGGCATCGGAAGTGAAGAAACTATGAAAT 606 ||||||||| || ||||| |||| || ||||| |||||||||||||||||| ||||| Sbjct 396 TCAGGGACAAAATTATTTGCTTCAT-GACGATGGTTTCGGAAGTGAAGAAACTAAGAAAT 454 Query 607 CCAATGAGCAGTTAAAGGTTTTTGAAAAGAGAAACAATGATTTGGGTGA-GG-G---T-G 660 ||| |||||||||| ||| ||| |||||||||||| ||||||| ||||| || | | | Sbjct 455 CCAGTGAGCAGTTAGAGGATTTAGAAAAGAGAAACCATGATTTTGGTGATGGTGAAGTCG 514 Query 661 ATAATGACACCACTGAAAAGAGATTTCAAAAGCT 694 ||||||||||||||||||||||||||||| |||| Sbjct 515 ATAATGACACCACTGAAAAGAGATTTCAAGAGCT 548 > AT1G48145.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Plant mobile domain protein family (TAIR:AT1G50790.1); Has 20 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17784507-17784913 REVERSE LENGTH=354 Length=354 Score = 115 bits (62), Expect = 5e-25 Identities = 148/186 (80%), Gaps = 20/186 (11%) Strand=Plus/Plus Query 540 GATGGTGATCAGGGACAGG---CTTGTTTGCGTCATGGA-GATGGCATCGGAAGTGAAGA 595 ||||| || ||||||||| |||||||| |||| || ||| ||||| |||||||||| Sbjct 148 GATGGAAATGAGGGACAGGATTGTTGTTTGCTTCAT-GATGATAGCATCAGAAGTGAAGA 206 Query 596 AACTATGAAATCCAATGAGCAGTTAAAGGTTTTTGAAAAGAGAAACAATGATTTGGGTGA 655 ||||||||||||||||||||||| | | | |||||| ||||||||||||| ||||| Sbjct 207 AACTATGAAATCCAATGAGCAGT-AC---TCT--GAAAAGGGAAACAATGATTTTGGTGA 260 Query 656 -GG-G-TG---ATAA---TGACACCACTGAAAAGAGATTTCAAAAGCTGTAGGTGCTGGC 706 || | || |||| ||||| ||||| |||||||||||| ||||| | ||||| || Sbjct 261 AGGTGATGTTGATAACAATGACAAGACTGATAAGAGATTTCAAGAGCTGAATGTGCTAGC 320 Query 707 ATTGTC 712 |||||| Sbjct 321 ATTGTC 326 Score = 65.8 bits (35), Expect = 6e-10 Identities = 37/38 (97%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 380 TGAAGCTGAGAAGGAAGATGCTGATGGAAGGATCAATG 417 |||||| ||||||||||||||||||||||||||||||| Sbjct 2 TGAAGCAGAGAAGGAAGATGCTGATGGAAGGATCAATG 39 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34812263871 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5