BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923533
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50790.1 | Symbols: | Plant mobile domain protein family | ... 610 6e-174
AT1G50800.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 150 2e-35
AT1G48145.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 115 5e-25
> AT1G50790.1 | Symbols: | Plant mobile domain protein family
| chr1:18824050-18826488 REVERSE LENGTH=2439
Length=2439
Score = 610 bits (330), Expect = 6e-174
Identities = 453/511 (89%), Gaps = 14/511 (3%)
Strand=Plus/Plus
Query 209 TGTTGTATCAGCACCAGAGACAAGTCTCTGTGATGTTGAGCTTAATGTATATGGAAGCAA 268
||||||||||||||||||||||| | | | || ||| | |||||||||||| |||
Sbjct 1836 TGTTGTATCAGCACCAGAGACAA-TGAC-ATTCTG-TGA---TGATGTATATGGAAACAA 1889
Query 269 TGCAGAGAAGAAGACTATGATCGATGATGACAACGAGGAACCAAAGTGTTTGCCCCATGA 328
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 1890 TGCAGAGAAGAAGACTATGATCGATGATGACAGCGAGGAATTAAAGTGTTTGCTCCATGA 1949
Query 329 AGATGGTACCATAACTAGAGAAATGGTGAGATCAGATAAGAAGTGTTGCAGTGAAGCTGA 388
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1950 AGATGGTACCATAACTAGAGAAATGGCGAGATCAGATAAGAAGTGTTGCAGTGAAGCTGA 2009
Query 389 GAAGGAAGATGCTGATGGAAGGATCAATGAGAAGGTGCTAGCATTAAAGGCAGACAACAA 448
||||||||||||||||||| |||||| ||| ||||| ||||||| |||||||||||||||
Sbjct 2010 GAAGGAAGATGCTGATGGAGGGATCAGTGACAAGGTTCTAGCATCAAAGGCAGACAACAA 2069
Query 449 AATATCCAAACCTCATCAAAAGCTTGCTTCTGGATGCGCTAATGGAGATAAAACAAGCAA 508
|| ||| | ||| ||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 2070 AAAATCGATCCCTTATCAAAAACTTGCTTCTGGATGCGCTAATGGAGATGAGACAAGCAA 2129
Query 509 AGCATATCAGCGTAAGGTTCTAAAGCCATCTGATGGTGATCAGGGACAGGCTTGTTTGCG 568
||||||| ||| |||||| || |||| |||||||| |||||| || ||||||||||
Sbjct 2130 AGCATATAAGCCTAAGGTACTGAAGCGGTCTGATGGAAATCAGGCTCATGCTTGTTTGCT 2189
Query 569 TCATGGA-GATGGCATCGGAAGTGAAGAAACTATGAAATCCAATGAGCAGTTAAAGGTTT 627
|| || | ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2190 TCCTG-ATGATGGAATCAGAAGTGAAGAAACTATGAAATCCAACGAGCAGTTAAAGGTTT 2248
Query 628 TTGAAAAGAGAAACAATGATTTGGGTGAGGGTGAT----A-A-TGACACCACTGAAAAGA 681
||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 2249 TTGAAAAGAGAAACAATGATTTGGGTGAGGGTGATGTTGATAATGACACCACTGAAAAGA 2308
Query 682 GATTTCAAAAGCTGTAGGTGCTGGCATTGTC 712
||| |||||||||| | ||||||||||||||
Sbjct 2309 GATCTCAAAAGCTGAATGTGCTGGCATTGTC 2339
> AT1G50800.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Plant mobile domain protein family (TAIR:AT1G50790.1);
Has 38 Blast hits to 34 proteins in 9 species: Archae -
0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 26; Viruses
- 1; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:18826909-18828338
REVERSE LENGTH=684
Length=684
Score = 150 bits (81), Expect = 2e-35
Identities = 131/154 (85%), Gaps = 8/154 (5%)
Strand=Plus/Plus
Query 548 TCAGGGACAGGCTTGTTTGCGTCATGGA-GATGGCATCGGAAGTGAAGAAACTATGAAAT 606
||||||||| || ||||| |||| || ||||| |||||||||||||||||| |||||
Sbjct 396 TCAGGGACAAAATTATTTGCTTCAT-GACGATGGTTTCGGAAGTGAAGAAACTAAGAAAT 454
Query 607 CCAATGAGCAGTTAAAGGTTTTTGAAAAGAGAAACAATGATTTGGGTGA-GG-G---T-G 660
||| |||||||||| ||| ||| |||||||||||| ||||||| ||||| || | | |
Sbjct 455 CCAGTGAGCAGTTAGAGGATTTAGAAAAGAGAAACCATGATTTTGGTGATGGTGAAGTCG 514
Query 661 ATAATGACACCACTGAAAAGAGATTTCAAAAGCT 694
||||||||||||||||||||||||||||| ||||
Sbjct 515 ATAATGACACCACTGAAAAGAGATTTCAAGAGCT 548
> AT1G48145.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Plant mobile domain protein family (TAIR:AT1G50790.1);
Has 20 Blast hits to 16 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17784507-17784913
REVERSE LENGTH=354
Length=354
Score = 115 bits (62), Expect = 5e-25
Identities = 148/186 (80%), Gaps = 20/186 (11%)
Strand=Plus/Plus
Query 540 GATGGTGATCAGGGACAGG---CTTGTTTGCGTCATGGA-GATGGCATCGGAAGTGAAGA 595
||||| || ||||||||| |||||||| |||| || ||| ||||| ||||||||||
Sbjct 148 GATGGAAATGAGGGACAGGATTGTTGTTTGCTTCAT-GATGATAGCATCAGAAGTGAAGA 206
Query 596 AACTATGAAATCCAATGAGCAGTTAAAGGTTTTTGAAAAGAGAAACAATGATTTGGGTGA 655
||||||||||||||||||||||| | | | |||||| ||||||||||||| |||||
Sbjct 207 AACTATGAAATCCAATGAGCAGT-AC---TCT--GAAAAGGGAAACAATGATTTTGGTGA 260
Query 656 -GG-G-TG---ATAA---TGACACCACTGAAAAGAGATTTCAAAAGCTGTAGGTGCTGGC 706
|| | || |||| ||||| ||||| |||||||||||| ||||| | ||||| ||
Sbjct 261 AGGTGATGTTGATAACAATGACAAGACTGATAAGAGATTTCAAGAGCTGAATGTGCTAGC 320
Query 707 ATTGTC 712
||||||
Sbjct 321 ATTGTC 326
Score = 65.8 bits (35), Expect = 6e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 380 TGAAGCTGAGAAGGAAGATGCTGATGGAAGGATCAATG 417
|||||| |||||||||||||||||||||||||||||||
Sbjct 2 TGAAGCAGAGAAGGAAGATGCTGATGGAAGGATCAATG 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5