BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923547
Length=247
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein fa... 180 6e-45
AT1G29430.1 | Symbols: | SAUR-like auxin-responsive protein fa... 141 3e-33
AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein fa... 97.1 6e-20
> AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10301152-10301951 REVERSE LENGTH=800
Length=800
Score = 180 bits (97), Expect = 6e-45
Identities = 166/198 (84%), Gaps = 10/198 (5%)
Strand=Plus/Plus
Query 11 GCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTAAGCCGGAAAAGAATCTC 70
|||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 61 GCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTAAGAAGGAAAAGAATCTC 120
Query 71 ATTTCAGAGATCAACT-A--CTAGTAGC---TCAAGTG-TAGTAGAGAAGGGCTGTTATG 123
||||| ||||||||| | ||| |||| |||| | | | |||||||||||||| ||
Sbjct 121 TTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCT-GCAGAGAAGGGCTGTTTTG 179
Query 124 TGGTTTACACGGCGGATA-AAGTACGTTTTGCTTTCCCAATAAGTTACCTTAGAAACTCT 182
|||||||||| | |||| || | || |||||||| ||||||||||| || || ||||||
Sbjct 180 TGGTTTACACATCCGATAGAA-TCCGCTTTGCTTTTCCAATAAGTTATCTGAGCAACTCT 238
Query 183 GTTTTTCAAGAGCTCTTG 200
||| | ||||||||||||
Sbjct 239 GTTATCCAAGAGCTCTTG 256
> AT1G29430.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10302650-10303335 REVERSE LENGTH=686
Length=686
Score = 141 bits (76), Expect = 3e-33
Identities = 162/201 (81%), Gaps = 16/201 (8%)
Strand=Plus/Plus
Query 11 GCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTT-AAGCCGGAAAAGAATCT 69
|||| ||||| ||||||||||||||||||||||||||||| | ||| | |||||||| |
Sbjct 130 GCTCATGAAGTTGGCCAAGAAATGGCAACAAAGAGCAGCCCTCAAGA-GAAAAAGAATTT 188
Query 70 CATTTCAGAGATCAACTA---CTAGTAGCT-C-AAGT-G-TAGTAGAGAAGGGCTGTTAT 122
||||||||||||||| || ||| |||| | || | | ||||| ||||| |||| |
Sbjct 189 CATTTCAGAGATCAAGTATTACTACTAGCAGCCAAACAGCT-GTAGAAAAGGGTTGTT-T 246
Query 123 -GTGGTTTACACGGCGGATAA-AGTACGTTTTGC-TTTCCCAATAAGTTACCTTAGAAAC 179
|||||||||||||| ||||| | | |||||| | |||||| |||||||||| || |||
Sbjct 247 CGTGGTTTACACGGCTGATAAGA-TCCGTTTTTCATTTCCCT-TAAGTTACCTAAGCAAC 304
Query 180 TCTGTTTTTCAAGAGCTCTTG 200
|| || | ||||||||||||
Sbjct 305 ACTATTGTCCAAGAGCTCTTG 325
> AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10307507-10308143 REVERSE LENGTH=637
Length=637
Score = 97.1 bits (52), Expect = 6e-20
Identities = 67/74 (91%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 18 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTT-AAGCCGGAAAAGAATCTCATTTCA 76
||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||| ||
Sbjct 113 AAGATGGCCAAGAAATGGCAACAAAGAGCTGCCCTCAAGA-GGAAAAGAATCTCATTCCA 171
Query 77 GAGATCAACTACTA 90
|||||||||||||
Sbjct 172 AAGATCAACTACTA 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11209708027
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5