BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923549

Length=958
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29480.1 | Symbols:  | unknown protein; Has 20 Blast hits to...   473    1e-132


> AT1G29480.1 | Symbols:  | unknown protein; Has 20 Blast hits 
to 20 proteins in 8 species: Archae - 0; Bacteria - 7; Metazoa 
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes 
- 6 (source: NCBI BLink). | chr1:10317936-10318711 FORWARD 
LENGTH=678
Length=678

 Score =  473 bits (256),  Expect = 1e-132
 Identities = 402/469 (86%), Gaps = 24/469 (5%)
 Strand=Plus/Plus

Query  417  ACAACAACAAAGGTT-ACTAAACCGGA-GAAATCAATTACGGCTTCCTCGAAAGAGTGTT  474
            ||||||||||| ||| || |||||||| |||| |||| |||||||| |||||||||||| 
Sbjct  214  ACAACAACAAA-GTTGACAAAACCGGAGGAAA-CAATCACGGCTTCTTCGAAAGAGTGTC  271

Query  475  TTCACGAAACAGAGACGAAGAAGCCTAATGGGATTGATTTGAGAAACTTGATCGCAAAGG  534
            |||| |||||| ||||||| |||   ||   |  |||||||||| |||||||||| ||||
Sbjct  272  TTCAAGAAACAAAGACGAATAAG---AA---GCCTGATTTGAGAGACTTGATCGCCAAGG  325

Query  535  CGCAAGATAAAATCCAAAACAAACGGCAGATCGATCATCGAAGAGACGACATCACAAGGC  594
            | ||||| ||||||||||||||| || ||||  |||||||||||||  |||||||||| |
Sbjct  326  CACAAGAAAAAATCCAAAACAAAAGGGAGATTAATCATCGAAGAGAATACATCACAAGAC  385

Query  595  AGAGAATAGCTGCACGCTTAGCTCTAAATCAAATGGTAGCAACCGTTAGTTTTGACGATC  654
            |||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct  386  AGAGGATAGCTGCACGCTTAGCTCTAAACCAGATGGTAGCAACCGTTAGCTTTGACGATC  445

Query  655  ATCTCAACTATCATAGAGAACTGGAACAGCTTGGCTACACATTCATTCAAGAGGAAGTTG  714
            |||||||||||||||||||| ||||||||| |||||||||||| ||||||||  ||||||
Sbjct  446  ATCTCAACTATCATAGAGAAATGGAACAGCGTGGCTACACATTTATTCAAGATCAAGTTG  505

Query  715  ATTACTTGAGCATGTTCAATTTATGGTCAAGAAGCGACTACAATGGTATCACTAACTCTG  774
            || |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct  506  ATAACTTGAACATGTTCAGTTTATGGTCAAGAAGCGATTACAATGGTATCACTAACTCTG  565

Query  775  TCTTGGAAAAGAACAAAACGCCA-TG-G-TCTGATGAAGATTCAACGAGAAAGAAACATC  831
            ||||||||| || ||| ||| || || | ||||||||||||||| |||||||||| ||  
Sbjct  566  TCTTGGAAACGAGCAATACGACAATGCGGTCTGATGAAGATTCATCGAGAAAGAAGCA--  623

Query  832  GTCAGAGCTCAACAAAAGGAAATAGTATGGAGCAGCATTCCCTGCAGAT  880
            | ||||  ||| |||||  ||| || | | | || |||||||| |||||
Sbjct  624  G-CAGA--TCATCAAAA--AAA-AG-A-GCAACA-CATTCCCTACAGAT  663



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46868459151


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5