BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923550 Length=488 Score E Sequences producing significant alignments: (Bits) Value AT1G50880.1 | Symbols: | F-box and associated interaction doma... 344 4e-94 > AT1G50880.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:18860837-18861982 FORWARD LENGTH=840 Length=840 Score = 344 bits (186), Expect = 4e-94 Identities = 287/334 (86%), Gaps = 13/334 (4%) Strand=Plus/Plus Query 131 TACCATGAACAACAAAGATATCACATTGTGGGTTTTGGAGGATGCTAAATGGTTGTGCAA 190 ||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 513 TACCATGTACAACAAGGATATCACACTGTGGGTTTTGGAGGATGCCAAATGGTTGTGCAA 572 Query 191 ACACTTTACT-GCACCATCTT-T--TGATCAGCCTTTAAAATCACTTTGCGGAATTAATG 246 |||||||||| | | |||||| | |||||||||||| || |||||| ||| || |||| Sbjct 573 ACACTTTACTAG-AGCATCTTATAATGATCAGCCTTTGCAAGCACTTTCCGGGATAAATG 631 Query 247 GTATCACTGATGATGGTGAGTTTATTTATGTACCATATGTTCTCAACTCGTTTTATATTT 306 |||||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||| Sbjct 632 GTATCACTGATGATGGTGAGTTTATTTATGTAGCATACGTTCTCGACTCGTTCTATATTT 691 Query 307 TATATTATGATCCGGAGAAAAAGGGCTACAGAAAAGTCGATTTTGAAGGAATCGCCGATG 366 |||| || ||||||||||||||| ||||||||| ||||||| || ||||| ||| ||||| Sbjct 692 TATACTACGATCCGGAGAAAAAGAGCTACAGAAGAGTCGATCTTCAAGGAGTCGGCGATG 751 Query 367 CTGATTTTAGGCTCAGTAATGGACTTGGAAACGAAAGTCTGTA-TCCGT-TCCATACTTG 424 ||||||||| |||| ||||||||||||||||| | | || | | || |||||||||| Sbjct 752 CTGATTTTATGCTCCGTAATGGACTTGGAAAC-ATGGA-TGGAATTCGGATCCATACTTG 809 Query 425 CGTCAGTCACACTGAGAGTCTCTT-TCTTTGTAA 457 | ||| ||| ||||||||| || ||||||||| Sbjct 810 CCTCA---ACATTGAGAGTCTATTGTCTTTGTAA 840 Score = 63.9 bits (34), Expect = 1e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 1 AATCCAATGTTGACATTATAATGAGTTTTGATGTCAG 37 |||| |||||||||||||||||||||||||||||||| Sbjct 476 AATCTAATGTTGACATTATAATGAGTTTTGATGTCAG 512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23258410061 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5