BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923550

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50880.1 | Symbols:  | F-box and associated interaction doma...   344    4e-94


> AT1G50880.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:18860837-18861982 FORWARD LENGTH=840
Length=840

 Score =  344 bits (186),  Expect = 4e-94
 Identities = 287/334 (86%), Gaps = 13/334 (4%)
 Strand=Plus/Plus

Query  131  TACCATGAACAACAAAGATATCACATTGTGGGTTTTGGAGGATGCTAAATGGTTGTGCAA  190
            ||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct  513  TACCATGTACAACAAGGATATCACACTGTGGGTTTTGGAGGATGCCAAATGGTTGTGCAA  572

Query  191  ACACTTTACT-GCACCATCTT-T--TGATCAGCCTTTAAAATCACTTTGCGGAATTAATG  246
            |||||||||| | | |||||| |  ||||||||||||  || |||||| ||| || ||||
Sbjct  573  ACACTTTACTAG-AGCATCTTATAATGATCAGCCTTTGCAAGCACTTTCCGGGATAAATG  631

Query  247  GTATCACTGATGATGGTGAGTTTATTTATGTACCATATGTTCTCAACTCGTTTTATATTT  306
            |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||
Sbjct  632  GTATCACTGATGATGGTGAGTTTATTTATGTAGCATACGTTCTCGACTCGTTCTATATTT  691

Query  307  TATATTATGATCCGGAGAAAAAGGGCTACAGAAAAGTCGATTTTGAAGGAATCGCCGATG  366
            |||| || ||||||||||||||| ||||||||| ||||||| || ||||| ||| |||||
Sbjct  692  TATACTACGATCCGGAGAAAAAGAGCTACAGAAGAGTCGATCTTCAAGGAGTCGGCGATG  751

Query  367  CTGATTTTAGGCTCAGTAATGGACTTGGAAACGAAAGTCTGTA-TCCGT-TCCATACTTG  424
            ||||||||| |||| ||||||||||||||||| |  |  || | | ||  ||||||||||
Sbjct  752  CTGATTTTATGCTCCGTAATGGACTTGGAAAC-ATGGA-TGGAATTCGGATCCATACTTG  809

Query  425  CGTCAGTCACACTGAGAGTCTCTT-TCTTTGTAA  457
            | |||   ||| ||||||||| || |||||||||
Sbjct  810  CCTCA---ACATTGAGAGTCTATTGTCTTTGTAA  840


 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  1    AATCCAATGTTGACATTATAATGAGTTTTGATGTCAG  37
            |||| ||||||||||||||||||||||||||||||||
Sbjct  476  AATCTAATGTTGACATTATAATGAGTTTTGATGTCAG  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23258410061


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5