BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923551
Length=2509
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50890.1 | Symbols: | ARM repeat superfamily protein | chr1... 3969 0.0
> AT1G50890.1 | Symbols: | ARM repeat superfamily protein | chr1:18862171-18866039
REVERSE LENGTH=2877
Length=2877
Score = 3969 bits (2149), Expect = 0.0
Identities = 2389/2508 (95%), Gaps = 4/2508 (0%)
Strand=Plus/Plus
Query 4 ATCTCTACCAATTTCAAATGCGATCACAAACCGCTTCAAAATCTCCAATGAAACCTTCTT 63
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 271 ATCTCTACCAATTTCAAATGCGATCACAAACCGCTTCAAAAACTTCAATGAAACCTTCTT 330
Query 64 CAAATGCATCTTCGTTCTCCGTCAGATCCTCCGTCGCAGTTTCGTCTCACTTAGCAATGG 123
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 331 CAAATTCATCTGCGTTCTCCGTCAGATCCTCCGTCGCAGTTTCGTCTCACTCAGCAATGG 390
Query 124 TGGAATTGAAGCAGAGGATCTTAACTTCTCTCTCTAGACTTGGTGATCGCGATACTTATC 183
| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 391 TTGAATTGAAACAGAGAATCTTAACCTCTCTCTCTAGACTCGGTGATCGCGATACTTATC 450
Query 184 AAATCGCAGTCGATGATCTCGAGAAAATCGTCCTCTCCGTCTCCGATTCACCCGAAATTC 243
| || || || ||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 451 AGATAGCTGTAGATGATCTCGAGAAAATCGTCGTCTCCGTCCCCGATTCACCCGAAATCC 510
Query 244 TTCCGGTGCTTCTCCATTGTCTTTTCGATTCCTTCTCCGATCCCAAACCTCCGGTCAAGA 303
| || |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 511 TCCCCGTGCTTCTCCATTGTCTTTTCGATTCCTCCTCCGATCTTAAAGCTCCGGTCAAGA 570
Query 304 GAGAATCAATTCGTCTCCTCTCCTTTCTTTGCCTCTCTTACCCCGATCTCTCCTTTTCAC 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 571 GAGAATCAATTCGTCTCCTCTCCTTTCTTTGCCTCTCTTACACCGATCTCTCCTTTTCAC 630
Query 364 AATTAGCCAAAATCATCTCACACATCGTTAAGCGTCTCAAGGACGCCGATAACGGTGTAC 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 631 AATTAGCCAAAATCATCTCACACATCGTCAAGCGTCTCAAGGACGCCGATAACGGTGTAC 690
Query 424 GCGACGCTTGTCGCGACGCAATTGGTTCTCTCTCTGCGCAGTTTCTGAAAGAGAAGGAAG 483
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 691 GCGACGCTTGTCGCGACGCGATTGGTTCTCTCTCTGCGCAGTTTCTGAAGGAGAAGGAAG 750
Query 484 TAGAAAATGGAAATTCTGTTGGGTCTTCGTTGGTGGGGCTTTTTGCTAAACCTTTGTTTG 543
|||| |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 751 TAGAGAATGGAAATTATGTTGGGTCTTCGTTGGTGGGGCTATTTGCTAAACCCTTGTTTG 810
Query 544 AAGCAATGGCGGAGCAGAACAAAAGCTTACAATCTGGTGCTGCGATTTGTATGGGGAAGA 603
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 811 AAGCAATGGCGGAGCAGAACAAAAGCTTACAATCTGGTGCTGCCATTTGTATGGGGAAGA 870
Query 604 TGATTGATTCAGCAACGGAGCCTCCCGTTGCAGCTTTTCAAAAACTGTGCCCTAGAATCT 663
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 871 TGATTGATTCAGCAACGGAGCCTCCTGTTGCAGCTTTTCAAAAACTGTGCCCTAGAATCT 930
Query 664 CCAAGCTTTTGAATAGCCCCAATTACATTACTAAGGGTTCACTCTTACCTGTAGTTGGAA 723
|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 931 CCAAGCTTTTGAATAGCCCCAATTACATTACTAAGGCTTCACTCTTACCCGTTGTTGGAA 990
Query 724 GCTTGTCTCAGGTTGGAGCTATTGCACCACAGAGCTTAGAATCATTGCTACACAGCATTC 783
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 991 GCTTGTCCCAGGTTGGAGCTATTGCACCACAGAGCTTGGAATCATTGCTACACAGCATTC 1050
Query 784 ACGAGTGCCTTGGATGTACGAATTGGGTTACTCGTAAAGCAGCTGCTGATGTTTTAATCT 843
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1051 ACGAGTGCCTTGGATGTACGAATTGGGTTACTCGTAAAGCAGCTGCTGATGTCTTAATCT 1110
Query 844 CCTTGGCTGTCCATTCTAGCAGTTTGGTTGCAGACAAAACAGATTCCACTCTTACAGCTC 903
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCTTGGCTGTCCATTCTAGTAGCTTGGTTGCAGACAAAACAGATTCCACTCTTACAGCTC 1170
Query 904 TTGAGGCATGTCGTTTTGATAAGATAAAACCTGTTAGAGAAAGCTTGTCTGAAGCACTAA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 TTGAGGCATGTCGTTTTGATAAGATAAAACCTGTTAGAGAAAGCTTGTCTGAAGCACTAA 1230
Query 964 ACGTCTGGAAGAACATTGCTGGAAAAGGTGAATCTGGAACATTAGATGACCAGAAGGATG 1023
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1231 ACGTCTGGAAGAACATTGCTGGAAAAGGTGAATCTGGAACAATGGATGACCAGAAGGATG 1290
Query 1024 TGTCATCTGAGCAATGTATGTTAGAAAGGAATGGAGAAATTGATTCATTTTCATGTGAGG 1083
||||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||||
Sbjct 1291 TGTCATCTGAGCAATGTATATTGGAAAGGAATGGAGAAACTGATTCAGTTTCATGTGAGG 1350
Query 1084 AAGCAGGACC-GTTGATGCAAGGCTCTTGTGATGGTTTGAGCAGTAATTCAGATTCAATT 1142
||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1351 AAGCAGGACTAGT-GATGCAAGGCTCTTGTGATGGTTTGAGCAGTAGTTCAGATTCTATT 1409
Query 1143 TCGAAAGCAGTTCTCATTTTGAGGAAGAAAGCACCTCGGTTGACTGGCAAAGATCTTAAC 1202
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1410 TCAAAAGCAGTTCTCATTTTGAGAAAGAAGGCACCTCGGTTGACTGGCAAAGATCTTAAC 1469
Query 1203 CCAGAGTTTTTCCAGAAACTGGAAAAAAGAGATTCTGGTGATATGCCAGTTGAAGTTATT 1262
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1470 CCAGAGTTTTTTCAGAAACTGGAAAAAAGAGGTTCTGGTGATATGCCAGTTGAAGTTATT 1529
Query 1263 CTTCCCTGTAGGCAAAAGAATTCGTCGAACTCAAACACAGAGGATGAATCAGATGCCAAT 1322
||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1530 CTTCCTTCTAGGCAAAAGAATTCGTCGAACTCAAATACAGAGGATGAATCAGACGCCAAT 1589
Query 1323 ACTTCAGTATCAAGGAGTAGGTCAAATGGTTTGTGCAGAACAGCTGCTGTCCATACCAAA 1382
|||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1590 ACTTCAGTATTAAGGAGTAGGTCAAATGGTTTGTGCAGAACTGCTGGTGTCCATACCAAA 1649
Query 1383 CAAAGACATTTTGGAGATTTTGCAAGAGAAAAATGGGTTGATGAAAGAACGAACGGTGGC 1442
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1650 CAAAGACATTTTGGAGATTTTGCAAGAGAAAAATGGGTTGATGAAAGAATGAACGGAGGC 1709
Query 1443 GAATCACGGTTGAGAGCATTTGATGGAGATCATACTGAAGTAATCCAGGCGGACGCATCT 1502
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1710 GAATCACGGTTGAGAGCATTTGATGGAGATCATACTGAAGTAATCCAGGCGGACACATCT 1769
Query 1503 GAAAACAGAGGGAACTGGCCACCATTACAGAGACAGTTATTGCACTTGGAGAAACAACAA 1562
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1770 GAAAACAGAGGGAACTGGCCACCATTACAGAGACAGTTATTGCACTTGGAGAGACAACAA 1829
Query 1563 ACCCACATAATGAATATGTTACAGGATTTCATGGGTGGGTCACATGATGGCATGATAAGT 1622
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1830 ACCCACATAATGAATATGTTGCAGGATTTCATGGGTGGTTCACATGACGGCATGATAAGT 1889
Query 1623 TTGGAGAACCGTGTTAGAGGTCTAGAGAGGATTGTAGAAGAGATGTCTAGAGAAATGTCC 1682
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1890 TTGGAGAACCGTGTTAGAGGTCTTGAGAGGATTGTAGAAGAGATGTCTAGAGAAATGTCC 1949
Query 1683 ATACAATCAGGTGCGAGAGGAAAGGCGGCTGCATCATGGAGATCTGATGTAGATGGATGG 1742
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1950 ATACAATCAGGTGCGAGAGGAAAGGCGACTGCATCATGGAGATCTGATGTAGATGGATGG 2009
Query 1743 GATAGCCCTAACTATGGAGCTTCTTCGAGAAACACTCAGACCAGTACAAGAAAGATACGT 1802
||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2010 GATAGTCCTAACTATGGACCTTCTTCTAGAAACACTCAGACCAGTACAAGAAAGATACGT 2069
Query 1803 GGCACTGGTCCAACTGAGCAATCAGGTAACAGCAGAAGAGCTTGGGACAAAAGCTCTGTA 1862
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070 GGCACTGGTCCTTCTGAGCAATCAGGTAACAGCAGAAGAGCTTGGGACAAAAGCTCTGTA 2129
Query 1863 GCAATAAGACTAGATGAAGGACCTTCTGCTAGAAGCGTTTGGCAAGCTTCAAAAGATGAA 1922
||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2130 GCAATTAGACTAGGTGAAGGACCTTCTGCTAGAAGCGTGTGGCAAGCATCAAAAGATGAA 2189
Query 1923 GCTACTCTTGAAGCAATACGTGTGGCTGGAGAAGACTGTGGAACGTCAAGGAATAGGCGA 1982
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2190 GCTACTCTTGAAGCAATACGTGTGGCTGGAGAAGACTGTGGAACATCAAGGAATAGGCGA 2249
Query 1983 GTATCTATTCCCGAAGCAGAAGCAATGCTGGACGAAGATGATGATGACCGTGGAGGACAA 2042
||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 2250 GTATCTATTCCTGAAGCAGAAGCAATGATGGACGAAGATGATGATAACCGTGGGGGACAA 2309
Query 2043 CAGCGAGACCCTGTCTGGAATAGTTGGAGCAATGCGATGCACGCACTCCGAGTTGGTGAT 2102
||| |||||||| |||||| | ||||||| ||| || |||||||||| ||||||||||||
Sbjct 2310 CAGGGAGACCCTATCTGGACTTGTTGGAGTAATTCGGTGCACGCACTTCGAGTTGGTGAT 2369
Query 2103 ACCGATTCTGCATTTGCTGAGGTATTATCAACCGGAGACGATCATTTGCTTGTCAAGTTA 2162
||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct 2370 ACCGATTCTGCATTTGCTGAGGTATTATCTACTGGAGACGACCATTTACTTGTCAAGTTA 2429
Query 2163 ATGGACAAAACCGGTCCTGTTCTTGATCAACTATCGAGTGATATTGGAAACGAGGCTATC 2222
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2430 ATGGACAAAACCGGTCCTGTTCTTGATCAACTATCGAGTGATATGGGAAACGAGGCTATC 2489
Query 2223 CATTCTATTGCACAGTTTCTCCTGGATCATACTCTGTTTGATATCTGTCTATCTTGGATT 2282
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2490 CATTCTATTGCACAGTTTCTCCTGGATCATACTCTATATGATATCTGTCTATCTTGGATT 2549
Query 2283 CAACAGCTACTGGAAGTAACTGTAGAAAATGGAGCAGACTTTATGGGAATACCATTGGAG 2342
|||||||| || ||||||| ||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2550 CAACAGCTGCTAGAAGTAAGTGTAGAAAACGGAGCAGACTTTATGGGAATACCGTTGGAG 2609
Query 2343 TTGAAGAAGGAGCTTCTGTTGAATCTACATGAAGCTTCCTCGACAACAGATCCTCCTGAG 2402
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2610 TTGAAGAAGGAGCTTTTGTTGAATCTACATGAAGCTTTGTCGACAACAGATCCTCCAGAG 2669
Query 2403 GACTGGGAAGGTCTAGCTCCCGACCATCTTTTGGTCCG-GTTAGCATCTAACTGGACCAT 2461
||||||||||||||||||||||| |||||||||||| | |||||||||||| |||| |||
Sbjct 2670 GACTGGGAAGGTCTAGCTCCCGATCATCTTTTGGTC-GAGTTAGCATCTAATTGGAACAT 2728
Query 2462 CGAGCTCCAACATTTTGAAACATAGAATGTTTGGAAGACATTACATTG 2509
|||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2729 CGAGATCCAACATTTTGACACGTAGAATGTTTGGAAGACATTACATTG 2776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124514352526
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5