BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923563
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50990.1 | Symbols: | Protein kinase protein with tetratric... 2521 0.0
> AT1G50990.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr1:18902930-18905204 FORWARD LENGTH=1524
Length=1524
Score = 2521 bits (1365), Expect = 0.0
Identities = 1473/1526 (97%), Gaps = 4/1526 (0%)
Strand=Plus/Plus
Query 21 ATGGGTTGTTGTCAATCGTCATTCTTGAAACCGTCGTCATTGCATGACAAGAAAATCCCC 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGGTTGTTGTCAATCGTCATTCTTGAAACCGTCGTCATTGCATGACAAGAAAATCACC 60
Query 81 TCCGACGATATT-TCCGGCCGCCGTGGAAAAGGAGCCAAACGCGGTAATCGCCACCGTCA 139
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TCCGACGAT-TTATCCGGCCGCCGTGGAAAAGGAGCCAAACGTGGTAATCGCCACCGTCA 119
Query 140 TCCTAACGTTAATGAAGGCAGGGGATGGCTTTTTTCCGCCGTGCCGGACTTCTCCGAGTT 199
| ||||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 120 TGCTAACATTAATGAAGGCAGGGGATGGCATTTTTCCGACGTGCCAGACTTCTCCGAGTT 179
Query 200 CTCGGCATCGGTTCTTCGTGACGCTACGAACAATTTCAACAAAAACGCTGTCGTATCGGT 259
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 180 CTCGGCATCGGTTCTTCGTGACGCTACAAATAATTTCAACAAAAACGCTGTCGTATCAGT 239
Query 260 TTGTTCTGATCAAGAACCAAACGTTGTTTATCAAGGCTGCATTAAGAGTGACAAAGATAA 319
|||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||
Sbjct 240 TTGTTCTGATCAAGAACCAAACCTTGTTTACCAAGGCTGCATTAGGAGCGACAAAGATAA 299
Query 320 ACGTCTTATCGCCGTTAAAAAATTCTCCAAAACAACATGGCCTGATCCTAAACAATTCGC 379
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGTCTTATTGCCGTTAAAAAATTCTCCAAAACAACATGGCCTGATCCTAAACAATTCGC 359
Query 380 TGCAGAAGCGCGGGCTATCGGGAATTTGAGGCACGTAAGACTGGTGAATTTGATAGGTTA 439
| ||||||| ||||||||||| | ||||||||| |||||||| |||||||||||||||||
Sbjct 360 TACAGAAGCTCGGGCTATCGGCAGTTTGAGGCATGTAAGACTAGTGAATTTGATAGGTTA 419
Query 440 TTGTTGTGATGGAGATGAAAGGTTGCTTGTATCGGAGTACATGCCTAATCAAAGCCTAAC 499
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 TTGTTGTGAAGGAGATGAAAGGTTGCTTGTATCGGAGTACATGCCTAATGAAAGCCTAAC 479
Query 500 CAAACATCTATTTCATTGGGAGAAACAAACCATGGAGTGGGCTATGCGATTGAGAGTTGC 559
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 CAAACATCTATTTCATTGGGAGAAACAAACCATGGAATGGGCTATGCGATTGAGAGTTGC 539
Query 560 ACTTTATGTAGCTGAAGCTTTAGAATATTGTAGACAGAGTGGACTCAAATTGTACCATGA 619
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 ACTTTATGTAGCTGAAGCTTTAGAATATTGTAGGCAGAGTGGACTCAAATTGTACCATGA 599
Query 620 TCTCAATACTTGTAGGGTTCTCTTTGATGAGAATGGAAGTCCTCGGCTTTCATGTTTTGG 679
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTCAATACTTGTCGGGTTCTCTTTGATGAGAATGGAAGTCCTCGGCTTTCATGTTTTGG 659
Query 680 ATGGATGAAAAATAGCAAAGATGGCAAAAACTTCAGCACAAATCTTGCTTATACACCGCC 739
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 ATGGATGAAAAATAGCAAAGATGGCAAGAACTTCAGCACAAATCTTGCTTATACACCGCC 719
Query 740 CGAATATCTTAGAAGTGGTACGTTAATTCCAGAGAGTGTTGTCTTCAGCTTTGGGACGTT 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGAATATCTTAGAAGTGGTACGTTAATTCCAGAGAGTGTTGTCTTCAGCTTTGGGACGTT 779
Query 800 TCTTTTGGATCTTCTTAGTGGGAAACACATTCCTCCAAGTCATGCGGTCGATACAATTCA 859
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 780 TCTTTTGGATCTTCTTAGTGGGAAACACATTCCTCCAAGTCATGCGGTTGGTACAATTCA 839
Query 860 AAAGCAAAACTTAATTGTCTTGATGGATTCACATTTAGAAGGAAACTATCCTGAGGAAGA 919
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAAGCAAAACTTAAATGTCTTGATGGATTCACATTTAGAAGGAAACTATCCTGAGGAAGA 899
Query 920 CGCAGCCATGGTGTTTGATTTGGCTTCCAAATGCCTTCACAATAACCCTAATGAACGGCC 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGCAGCCATGGTGTTTGATTTGGCTTCCAAATGCCTTCACAATAACCCTAATGAACGGCC 959
Query 980 AGAAATTAGAGATATTATCTCAGTTATCGCTACACTTCAACAAAAACTAGATGTTCCGTC 1039
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 960 AGAAATTGGAGATATCATCTCAGTTATCACTACACTTCAACAAAAACTAGATGTTCCGTC 1019
Query 1040 CTATACTATGCTTGGCATTTCAAAACTTGAAAAGCTTGAAATGGAACGCCCGAAATCTTT 1099
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1020 CTATACTATGCTTGGAATTTCAAAACTTGAAAAGCTTGAAATGGAACACCCGAAATCTTT 1079
Query 1100 AATTTACGATGCATGTCACCAAAAGGACCTTGAAGCTCTTCATCAGATTCTTGAAGCAAT 1159
||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||
Sbjct 1080 AATTTACGATGCATGTCACCAAATGGACCTTGCAGCTCTTCATCAAATTCTTGAAGCAAT 1139
Query 1160 GGAGTACAAAGAAGATGAAGTTACTTGCGAGCTCTCTTTCCAGCAATGGGCTCAACAGAT 1219
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 GGAGTACAAAGAAGATGAAGTTACTTGTGAGCTCTCTTTCCAGCAATGGGCTCAACAGAT 1199
Query 1220 AAAAGATGTGTGCAACACTAGACAACAAGGCGATTCGGCTTTTCGGAACAAAAATTTCGA 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1200 AAAAGATGTGTGCAACACTAGACAACAAGGCGATTCGGCTTTTCGGAACAAACATTTCGA 1259
Query 1280 ATCTGCTATCGAAAAATATACTCAGTTCATAGAAACAGGAATCATGATCTCTCCTACTGT 1339
||||||||| || |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1260 ATCTGCTATTGATAAATATACTCAGTTCATAGAAATAGGAATCATGATCTCTCCCACTGT 1319
Query 1340 TTATGCACGAAGAAGCATGTGCTATCTCTTCTGCGACCAACCAGATGCAGCACTTCGAGA 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTATGCACGAAGAAGCATGTGCTATCTCTTCTGCGACCAACCAGATGCAGCACTTCGAGA 1379
Query 1400 CGCGATGCAAGCACAATGTGTTTACTCCGACTGGCCAACTGCATTTTACCTTCAGGCAGT 1459
||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 1380 CGCGATGCAAGCACAATGTGTCTATTCGGACTGGCCAACTGCATTTTACCTTCAGGCCGT 1439
Query 1460 GGCTCTTTC-AAAGCTGAATATGGTCGAAGATTCAGCTAACATGCTAAAAGAAGCCTTGA 1518
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 GGCTCTTTCCAAA-CTGAATATGGTCGAAGATTCAGCTACCATGCTAAAAGAAGCCTTGA 1498
Query 1519 TCTTGGAAGATAAGAGAGGCTCATAA 1544
||||||||||||||||||||||||||
Sbjct 1499 TCTTGGAAGATAAGAGAGGCTCATAA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208438210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5