BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923569

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51020.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   158    3e-38


> AT1G51020.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G51010.1). 
| chr1:18913110-18913828 FORWARD LENGTH=719
Length=719

 Score =  158 bits (85),  Expect = 3e-38
 Identities = 122/140 (87%), Gaps = 2/140 (1%)
 Strand=Plus/Plus

Query  121  CTGATTGTGTTGCCATTGAAGAAGCAATTAAGAAGTTAACTGATATGA-ACACGAAGTTG  179
            |||||| || ||||||||||||||| |  |||||| ||||||||| || | | |||||||
Sbjct  315  CTGATTTTGGTGCCATTGAAGAAGCCAGAAAGAAGCTAACTGATAAGAGA-ATGAAGTTG  373

Query  180  AAAGAGCTCTGTGAGAAGATGAAAGAAACTGTGAAGGAGACGAAGGAAACCCCACAGTGA  239
             ||||||||||||| |||| || ||||  | ||||||||| |||||||||||||||||||
Sbjct  374  CAAGAGCTCTGTGAAAAGAAGAGAGAAGTTATGAAGGAGAAGAAGGAAACCCCACAGTGA  433

Query  240  TAGGTTACTTTTACTTTTCC  259
            ||||||||||||||||||||
Sbjct  434  TAGGTTACTTTTACTTTTCC  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5