BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923570

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51020.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   119    1e-26


> AT1G51020.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G51010.1). 
| chr1:18913110-18913828 FORWARD LENGTH=719
Length=719

 Score =  119 bits (64),  Expect = 1e-26
 Identities = 97/113 (86%), Gaps = 2/113 (2%)
 Strand=Plus/Plus

Query  1    GTTTGAAATCTTTGTG-AAA-AAATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTT  58
            |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  162  GTTTGAAATCTTTGCGTAAACAAATGGCTAATGTTGGAAACACTAGTGGGTCTACTCCTT  221

Query  59   TTGAAGAGGTATGTCGTGAAATGACGCAGCTAAATGATGAAATTCAGAAGCTC  111
            |||||||| | |||| ||||||   | |  | || |||||||||||||| |||
Sbjct  222  TTGAAGAGCTGTGTCTTGAAATCTTGAATTTGAACGATGAAATTCAGAACCTC  274



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11712385517


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5