BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923582
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1349 0.0
> AT1G51080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 11 growth stages; Has 101 Blast hits
to 98 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa
- 38; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes
- 26 (source: NCBI BLink). | chr1:18929744-18930752 REVERSE
LENGTH=1009
Length=1009
Score = 1349 bits (730), Expect = 0.0
Identities = 844/896 (94%), Gaps = 20/896 (2%)
Strand=Plus/Plus
Query 9 GGGGACACAACAATGAGTTTCTCGGTGGTCTTGTTCCACAATCCTCA--CT-CTGCAATA 65
|||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||
Sbjct 1 GGGGACACAACAATGAGTTTCTCGGTGGTCTTGTTCCACAGTCCTCACTCTGCTGCAGTA 60
Query 66 ACAAGAACAACCATCTTCACAATCtcatcatcatcatcatcTTTCAGACCAAGAAGAAAT 125
|||| || ||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 61 ACAACAAAAACCATCTTCAGAA--TC-TCATCATCATCATCTTTCAGACCAAGAAGAAAT 117
Query 126 CTTTCTTCATCTAATCGTATCTTCCCCACCAATCAACCTAAACCCTTAGTCAAAAAACTT 185
||||||||||||||| |||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 118 CTTTCTTCATCTAATGGTATCTTCTCCACCAATCAGTCTAAACCCTTAATCAAAAAACTT 177
Query 186 CAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTCGGCAAGCACAAGGGC 245
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 CAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTCGGCAAACACAAGGGC 237
Query 246 AAAATGCTTGGTACTTTGCCTTCTTCTTATCTCAAATGGGTCTCAAAGAATCTTCGTGCA 305
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 AAAATGCTTGGTACTTTGCCTTCTTCTTATCTTAAATGGGTCTCAAAGAATCTTCGTGCA 297
Query 306 GGAGATTCTGAGTATTGGGCAAAGCTTGCTGATGAAGTGCTCGAAGACGATGTTTATAAA 365
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGAGTTTTTGAGTATTGGGCAAAGCTTGCTGATGAAGTGCTCGAAGACGATGTTTATAAA 357
Query 366 GATAGGACTGAGTGGGAATTTGCAGAGAAAATCCTCCATGGAAGTGATGAGAGCATGAAG 425
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 GATAGAACTGAGTGGGAATTTGCAGAGAAAATCCTCCATGGAAGTGATGAGAGCATG-AG 416
Query 426 -GCTTTAACTTCTGTAAAGAAGAGTAGAGAAGAGGTAAACTCTGTTTCGATGTTGTTGGA 484
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGCTTTAACTTCTGTAAGGAAGAGTAGAGAAGAGGTAAACTCTGTTTCGATGTTGTTGGA 476
Query 485 GATAAGTGAGAGATTTGGTTGGGATAATGAAGATAAGATTGGTTGGAGCAAAATCAATTT 544
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GATTAGTGAGAGATTTGGTTGGGATAATGAAGATAAGATTGGTTGGAGCAAAATCAATTT 536
Query 545 CGAGCTTTTGGGGACAAGTAAAGGTGGTCGGATTCCTAGGTTaaggaagatgaacgaaga 604
|||||||| |||||||| |||||||||||||||||||||||||||||| | || | |
Sbjct 537 TGAGCTTTTAGGGACAAGCAAAGGTGGTCGGATTCCTAGGTTAAGGAAG--G--CG-A-A 590
Query 605 ggaagaagaggaagaagagagaggagagatcgtaagaagaagagagattaagaagaagga 664
|||| | | ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 591 CGAAG-A-A-GAAGAAGAGAGAGGAGAAATGGTAAGAAGAAGAGAGATTAAGAAGAAGGA 647
Query 665 agaagaagaagatgagaatggatggaggagaagacagaggagagagaggatgagacagag 724
|||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 648 AGAAGAGGAAGATGAGAATGGATGGAGGAGAAAACAGAGGAGAGAAAGGATGAGACAGAG 707
Query 725 tcttgggagagatgatggCAAAACGGTGAATAGGAGTGAGCAGAAGGGTGTTTTGGGAAA 784
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 708 TCTTGGGAGAGATGATGGCAAGACAGTGAATAGAAGTGAGCAGAAGGGTGTTTTGGGAAA 767
Query 785 GTTAGAAGAAGTAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCTTTTCCTGGTCGTGA 844
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GCTAGAAGATGTAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCTTTTCCTGGTCGTGA 827
Query 845 GAGTCTGTTGAAGAAAGTCATGAACA-GAAGAAGGACTCAATGAAAACGTTTCTTT 899
|||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 828 GAGTCTGTTGAAGAAAGTCATGAACAAGA-GAAGGTCTCAATGAAAA-GTTTCTTT 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5