BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923583

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51090.1 | Symbols:  | Heavy metal transport/detoxification ...   712    0.0  


> AT1G51090.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr1:18932937-18933950 FORWARD LENGTH=767
Length=767

 Score =  712 bits (385),  Expect = 0.0
 Identities = 500/554 (90%), Gaps = 13/554 (2%)
 Strand=Plus/Plus

Query  1    CTCAAG-AATTCTCCCAAGCTATGGCTGAGAAGGTAGTAGTGATGATGAAGTTGAAAGTG  59
            |||||| ||  ||||||||||||||| ||||| |  |||||||||||||| |||||||||
Sbjct  28   CTCAAGCAAGACTCCCAAGCTATGGCGGAGAA-G--GTAGTGATGATGAAATTGAAAGTG  84

Query  60   GATCTAAACTGTTCCAAATGCTATAAAAAGGTTAAGAAAGCTCTCGGCAAATTCCCTCAA  119
            ||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||
Sbjct  85   GATCTAAACTGTTCCAAATGCTACAAAAAGGTCAAGAAAGCTATCCGCAAATTCCCTCAA  144

Query  120  ATAACAGACGAATTATTCGATGAGAAGTCGAACACGATCATCATCAAAGTGGTTTGTTAC  179
            |||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct  145  ATAACAGACGAATTGTTTGATGAGAAGTCCAACACGATCATCATCAAAGTAGTTTGTTAC  204

Query  180  GATCCTGAGAGGCTAATGAACAAACTTTGCTACAAAGGAGACGGTTCTATCAAGTCCATC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  GATCCTGAGAGGCTAATGAACAAACTTTGCTACAAAGGAGACGGTTCTATCAAGTCCATC  264

Query  240  GTGATCCTTGAGCCACCCAAACCACCTCAACCCCAGCCTCAACCTCCTCAGAAGCTCAAA  299
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | | 
Sbjct  265  GTGATCCTTGAGCCACCCAAACCGCCTCAACCCCAGCCTCAACCACCTCAGAAGC-CTAC  323

Query  300  GAGGCTCTGGCTCCAGCTCCAGCCCCAGCCCCAGTCCTAGCCCCAGCTC--CAGT-TCCG  356
              | | | | | ||||| ||||||| ||||| || || ||| |  | ||  | |  ||||
Sbjct  324  T-GCCCCAGCC-CCAGCCCCAGCCCAAGCCCAAGCCCCAGCTCTTGTTCGGCCGGCTCCG  381

Query  357  GCTCCTGTTTTTGTTTCGGCT-CCGGCTCCTCAACCGATGCCGATGTGGCAGCCGTATCA  415
            | ||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct  382  GTTCCTGTTCTTGTTTCGTCTTCCG-CTCCTCAACCGATGCCGATGTGGCAGCCGTATCA  440

Query  416  TTGTGGGCCGTATTACGAGGCCCAACAACACCAATGTTACGGAAGGCCCGTTTACGAGAG  475
            |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||
Sbjct  441  TTGTGGGCCGTATTACGAGGCCCAACAGTACCAATGTTATGGAAGGCCCGTTTACGAGAG  500

Query  476  CTGGGGAGGTGGACGACATTGTTGCCACGAAGACATGAACTCTCAAGGATGCTCCATCAT  535
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  501  CTGGGGAGGTGGACGACAATGTTGCCACGAAGATATGAACTCTCAAGGATGCTCCATCAT  560

Query  536  GTGAAACGCTTGAA  549
            ||||||| || |||
Sbjct  561  GTGAAACACT-GAA  573



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26825034498


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5