BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923588
Length=302
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21480.1 | Symbols: | Exostosin family protein | chr1:75189... 233 6e-61
> AT1G21480.1 | Symbols: | Exostosin family protein | chr1:7518946-7521504
REVERSE LENGTH=1637
Length=1637
Score = 233 bits (126), Expect = 6e-61
Identities = 164/180 (91%), Gaps = 12/180 (7%)
Strand=Plus/Plus
Query 67 AGGCTGACCGGAGTGACAAGAAAGACACAACTGCC-----TTC------A-ATATAATCA 114
|||||||||||| |||||||||||||||||||||| ||| | |||||||||
Sbjct 737 AGGCTGACCGGACTGACAAGAAAGACACAACTGCCTTTAATTCATGGAAAGATATAATCA 796
Query 115 TACCAGGAAACGTCGATGATGCTTTGACTAAAAATGGACAAGCTGATGTTCAGCCTTTGC 174
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 797 TACCAGGAAACGTCGATGATGCTATGACTAAAAATGGACAACCTGATGTTCAGCCTTTGC 856
Query 175 CTCTGTCAAAGAGGAAGTATTTAGCAAATTATTTAGGTCGTGCGCAAGGGAAGGCTGGTC 234
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 857 CTCTGTCAAAGAGGAAGTATTTAGCAAATTATTTAGGTCGTGCACAAGGGAAGGCTGGTC 916
Score = 108 bits (58), Expect = 4e-23
Identities = 65/68 (96%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 2 ATGTTGAGAATGTGTGAGAATGTTGGGAGGTCTTAATGACAAGGAGATTAATCAGACCTA 61
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 ATGTT-A-AATGTGTGAGAATGTTGGGAGGTCTTAATGACAAGGAGATCAATCAGACCTA 596
Query 62 TGTCAAGG 69
||||||||
Sbjct 597 TGTCAAGG 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13974434222
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5