BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923591

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51160.1 | Symbols:  | SNARE-like superfamily protein | chr1...   942    0.0  


> AT1G51160.1 | Symbols:  | SNARE-like superfamily protein | chr1:18949595-18951783 
FORWARD LENGTH=845
Length=845

 Score =  942 bits (510),  Expect = 0.0
 Identities = 539/553 (97%), Gaps = 2/553 (0%)
 Strand=Plus/Plus

Query  1    CTCCCGGAGACGACGAAAGCAATGCAGTTCTTCGGTGGATCTGAGATAAGTCCGTCTCCG  60
            ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  92   CTCCCGGAGACGACGGAAGCAATGCAGTTCTTCGGTGGATCTGAGATTAGTCCGTCGCCG  151

Query  61   CCAGTTCCGACGGCGAGTGGAAACAACGCGCACATGATGTACGTTTTCAATCGTAATGGT  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  152  CCAGTTCCGACGGCGAGTGGAAACAACGCGCACATGATGTACGTTTTCAATCGTAACGGT  211

Query  121  GTATGTCTTCTCTACAAAGAATGGAATCGGCCTCTTCATACGCTTAATCCTCAGCAAGAT  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  212  GTATGTCTTCTCTACAAAGAATGGAATCGGCCTCTTCATACACTTAATCCTCAGCAAGAT  271

Query  181  CACAAGCTCATGTTTGGtcttctcttctctctcaaatctctcACCGCTAAGATGGATCCA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  CACAAGCTCATGTTTGGTCTTCTCTTCTCTCTCAAATCTCTCACCGCTAAGATGGATCCA  331

Query  241  GTCAATGCGGATAAGGGAAAT-TTAGGGGTTCCACAGTTGCCAGGACAAGGTTGCTCTTT  299
            |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct  332  GTCAATGCGGATAAAGGAAATCTT-GGGGTTCCACAGTTGCCAGGACAAGGTTGCTCTTT  390

Query  300  CCATAGTTTCCGTACGAATACTTACAAGCTAAGCTTCATGGAGACTCCCTCTGGTATTAA  359
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  391  CCATAGTTTCCGTACGAATACTTACAAGCTAAGTTTCATGGAGACTCCCTCTGGTATTAA  450

Query  360  GATTATCTTAGTAACTCATCCAAAGACGGGAGATTTACGCGAATCCTTAAAGTACATCTA  419
            ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  451  GATTATCTTAGTAACTCATCCAAAGACCGGAGATTTACGCGAATCCTTGAAGTACATCTA  510

Query  420  CAGTTTATACGTTGAATATGTCGTAAAAAATCCTATTTACAGCCCAGGATCTCCAATCAA  479
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  511  CAGTTTATACGTTGAATATGTCGTAAAAAATCCTATATACAGCCCAGGATCTCCAATCAA  570

Query  480  GTCGGAGTTGTTCAACACTGCACTTGACCAGTACGTAAGGAGCATCTCATAGTGTGTGCA  539
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  571  GTCGGAGTTGTTCAACACTGCACTTGACCAGTACGTAAGGAGCATCTCTTAGTGTGTGCA  630

Query  540  TTACTGATTTGTC  552
            |||| ||||||||
Sbjct  631  TTACAGATTTGTC  643



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5