BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923593

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:160500...   337    5e-92


> AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050063-16051168 
FORWARD LENGTH=1106
Length=1106

 Score =  337 bits (182),  Expect = 5e-92
 Identities = 210/224 (94%), Gaps = 0/224 (0%)
 Strand=Plus/Plus

Query  5    CGTTTAGATTCCGATGATGATCGTGTCGTTCCAAAAACTTTTTCCTTCTCTCTCACGCGA  64
            |||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct  236  CGTTCAGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTTCTCTCTCACGCGA  295

Query  65   CTCCACGACCGCTCGTTTTCACACACACGAGGTTGATCCTAACCAGTGTTGCTCTGCTGT  124
            ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| || ||
Sbjct  296  CTCCACGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAATCAGTGTTGCTCCGCCGT  355

Query  125  TATTCAAGAGATCTCCGCTCCAATATCCACCGTTTGGTCCGTCGTCCACCGCTTTGATAA  184
            |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct  356  TATTCAAGAGATCTCCGCTCCAATCTCCACCGTTTGGTCCGTCGTACGCCGCTTTGATAA  415

Query  185  CCCACAAGCTTACAAACACTTTCTCAAAAGTTGCAGCGTCATCG  228
            |||||||||||||||||||||||||||||| || ||||||||||
Sbjct  416  CCCACAAGCTTACAAACACTTTCTCAAAAGCTGTAGCGTCATCG  459


 Score =  137 bits (74),  Expect = 5e-32
 Identities = 90/97 (93%), Gaps = 3/97 (3%)
 Strand=Plus/Plus

Query  227  CGTCATTTTCTTGATTTTTAGCCATCGTGTGATCTATGtttttttCCGGTTTATGTGTG-  285
            |||| |||||| ||||||||||| |||||||||||||| |||||| ||| ||||||||| 
Sbjct  852  CGTCGTTTTCTAGATTTTTAGCCGTCGTGTGATCTATG-TTTTTT-CGGCTTATGTGTGA  909

Query  286  aaaaaaaGTTACATTAGTGAATTAATCTCTCATGCAT  322
            |||||||||||||||||||||||||||||||||||||
Sbjct  910  AAAAAAAGTTACATTAGTGAATTAATCTCTCATGCAT  946



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5