BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923594
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superf... 2857 0.0
AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding superf... 767 0.0
AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:331552... 268 1e-70
> AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superfamily
protein | chr1:18977284-18980618 FORWARD LENGTH=2136
Length=2136
Score = 2857 bits (1547), Expect = 0.0
Identities = 1678/1741 (96%), Gaps = 10/1741 (1%)
Strand=Plus/Plus
Query 14 aaaaGGGAAATGAATTCTAACAACTGGCTTGCTTTTCCTCTATCACCAACTCACTCTTCT 73
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 108 AAAAGGGAAATGAATTCTAACAACTGGCTCGCGTTCCCTCTATCACCAACTCACTCTTCT 167
Query 74 TTGCCTCCTCACATTCACTCTTCACAAACTTCTCATTTCAATCTAGGTTTGGTCAACGAC 133
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 168 TTGCCGCCTCACATTCACTCTTCACAAAATTCTCATTTCAATCTAGGTTTGGTCAACGAC 227
Query 134 AATATCGACAACCCTTTTCAAAACCAAGAATGGAATATGATCAATCCACACGGTGGAGGC 193
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 228 AATATCGACAACCCTTTTCAAAACCAAGGATGGAATATGATCAATCCACATGGTGGAGGC 287
Query 194 GGCGAAGGTGGAGAGGTTCCAAAAGTGGCTGATTTCTTAGGAGTGAGCAAATCGGGGGAT 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GGCGAAGGTGGAGAGGTTCCAAAAGTGGCTGATTTCTTAGGAGTGAGCAAATCGGGGGAT 347
Query 254 CATCATC-CCGACCACAACCTCGTACCTTACAACGACATTCATCAAACCAACGACTCAGA 312
||||| | |||| ||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 348 CATCA-CACCGATCACAACCTCGTACCTTATAACGACATTCATCAAACCAACGCCTCCGA 406
Query 313 CTACTACTTCCAAACCAATAGCTTGTTACCTACAGTCGTCACTTGTGCCTCTAATGCTCC 372
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CTACTACTTTCAAACCAATAGCTTGTTACCTACAGTCGTCACTTGTGCCTCTAATGCTCC 466
Query 373 TAATAACTATGAGCTTCAAGAGAGTGCTCACAATTTGCAATCTCTCACTCTTTCTATGGG 432
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 467 TAATAATTATGAGCTTCAAGAGAGTGCACACAATTTGCAATCTCTCACTCTCTCTATGGG 526
Query 433 AAGTACTGGAGCTGCCGCTGCCGAAGCT-GACACCGTGAAAGCCTCGCCGGCTGAGACTA 491
||||||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||
Sbjct 527 AAGTACTGGAGCTGCCGCTGCAGAAG-TCGCCACTGTGAAAGCCTCGCCGGCTGAGACTA 585
Query 492 GCGCCGATAATAGTAGTAGCACTACCAACACAAGTGGAGGAGCCATCGTTGAGGCTACAC 551
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GTGCCGATAATAGTAGCAGCACTACCAACACAAGTGGAGGAGCCATCGTTGAGGCTACAC 645
Query 552 CGAGACGGACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAGTTACAAGAC 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CGAGACGGACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAGTTACAAGAC 705
Query 612 ATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAAGAGAAGGAC 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAAGAGAAGGAC 765
Query 672 AATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCA 825
Query 732 GAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCAACTTTCCGA 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCAACTTTCCGA 885
Query 792 TAACTAATTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAAGAGTTTGTGG 851
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TAACTAACTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAAGAGTTTGTGG 945
Query 852 CTTCTATAAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCGATGTATCGTGGAGTAA 911
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 946 CTTCTATAAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCCATGTATCGTGGAGTAA 1005
Query 912 CAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATTGGCCGAGTTGCTGGAAACAAAG 971
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1006 CAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGCTGGAAACAAAG 1065
Query 972 ATCTATACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTATGATATAGCTG 1031
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1066 ATCTCTACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTATGACATAGCTG 1125
Query 1032 CGATAAAGTTTCGAGGTCTAAACGCGGTTACAAACTTTGAGATAAACCGTTACGACGTGA 1091
|||||||||||||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 1126 CGATAAAGTTTCGAGGTCTAAACGCGGTTACAAACTTTGAGATAAATCGGTATGATGTGA 1185
Query 1092 AAGCTATCCTAGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTAAACGGCTCAAAG 1151
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AAGCCATCCTGGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTAAACGGCTCAAAG 1245
Query 1152 AAGCTCAAGCTCTAGAATCATCGAGAAAACGCGAGGAAATGATAGCCCTCGGATCAAATT 1211
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1246 AAGCTCAAGCTCTAGAATCATCAAGAAAACGAGAGGAAATGATAGCCCTCGGATCAAATT 1305
Query 1212 TCCATCAGTATGGTGCAGCGAGCGGCTCGAGCTCTGTTGCTTCCAGCTCTAGGCTTCAGC 1271
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TCCATCAATATGGTGCAGCGAGCGGCTCGAGCTCTGTTGCTTCCAGCTCTAGGCTTCAGC 1365
Query 1272 TTCAACCATACCCACTAAGCATTCAACAACCTTTTGAGCATCTTCATCATCATCAGCCTT 1331
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TTCAACCTTACCCTCTAAGCATTCAACAACCTTTTGAGCATCTTCATCATCATCAGCCTT 1425
Query 1332 TACTTACTCTACAGAACAACAACGATATCTCTCAGTATCATGATTCCTATAGTTACATTC 1391
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1426 TACTTACTCTACAGAACAACAACGATATCTCTCAGTATCATGATTCCTTTAGTTACATTC 1485
Query 1392 AGACGCAGCTTCATCTTCACCAACAACAAACCAACAATTACTTGCAGTCTTCTAGTCACA 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 AGACGCAGCTTCATCTTCACCAACAACAAACCAACAATTACTTGCAGTCTTCTAGTCACA 1545
Query 1452 GCA-CACAGCTCTACAATGCTTATCTTCAGAGCAACCCTGGTTTGCTTCATGGCTTTATC 1510
| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||
Sbjct 1546 -CTTCACAGCTCTACAATGCTTATCTTCAGAGTAACCCTGGTCTGCTTCATGGATTTGTC 1604
Query 1511 TCTGATAACAACAACACTTCAGGGTTTCTTGGAAACAATGGGATTGGTATTGGCTCAACC 1570
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1605 TCTGATAATAACAACACTTCAGGGTTTCTTGGAAACAATGGGATTGGTATTGGGTCAAGC 1664
Query 1571 TCGACCGTTGGATCATCGGCTGAGGAAGAGTTTCCGGCTGTGAAAGTAGATTACGATATG 1630
|| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1665 TCTACCGTTGGATCATCGGCTGAGGAAGAGTTTCCAGCCGTGAAAGTCGATTACGATATG 1724
Query 1631 CCTCCTTCCGGTGGAGCTACAGGGTACGGAGGATGGAATACCGGAGAGTCTGTTCAAGGA 1690
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct 1725 CCTCCTTCCGGTGGAGCTACAGGGTATGGAGGATGGAATAGTGGAGAGTCTGCTCAAGGA 1784
Query 1691 AT-GAATCCAGGAGGTGTTTTCACGATGTGGAATGAATAAAAGATGATATT-TCTGTGTT 1748
| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1785 -TCGAATCCAGGAGGTGTTTTCACGATGTGGAATGAATAAAAGATGA-ATTCTCTGTGTT 1842
Query 1749 T 1749
|
Sbjct 1843 T 1843
> AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding superfamily
protein | chr3:7300675-7303693 FORWARD LENGTH=2137
Length=2137
Score = 767 bits (415), Expect = 0.0
Identities = 815/1002 (81%), Gaps = 52/1002 (5%)
Strand=Plus/Plus
Query 544 GGCTACACCGAGACG-GACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAG 602
||| || || ||||| | | ||||| ||||| |||||||||||||| ||||||||||| |
Sbjct 584 GGCCACGCCAAGACGTG-CATTGGACACTTTCGGACAACGAACCTCGATCTATCGTGGTG 642
Query 603 TTACAAGACATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAA 662
| ||||||||| ||||||| ||| ||||||| |||||||| ||||||||||| |||||||
Sbjct 643 TCACAAGACATCGATGGACTGGTCGATATGAGGCTCATCTATGGGATAATAGTTGTAGAA 702
Query 663 GAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGA 722
| ||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 703 GGGAAGGCCAGTCTAGGAAAGGAAGACAAGTTTACTTGGGTGGATATGACAAAGAAGATA 762
Query 723 AAGCAGCCAGAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCA 782
||||||| ||| |||||||||||||||||||||| || |||||||| || |||||||| |
Sbjct 763 AAGCAGCAAGATCATATGATCTAGCTGCACTTAAGTACTGGGGTCCTTCAACTACTACTA 822
Query 783 ACTTT-CCGATAACTAATTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAA 841
| ||| || || || || |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 823 A-TTTCCCCATTACAAACTACGAGAAAGAAGTAGAGGAAATGAAGCACATGACGAGACAA 881
Query 842 GAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCGATGTAT 901
||||| |||||| | || |||||||||||||| ||||| ||| | || || |||||||||
Sbjct 882 GAGTTCGTGGCTGCCATTAGAAGGAAAAGTAGTGGATTTTCGAGAGGCGCTTCGATGTAT 941
Query 902 CGTGGAGTAACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATTGGCCGAGTTGCT 961
|| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 942 CGAGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGCC 1001
Query 962 GGAAACAAAGATCTATACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTAT 1021
||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1002 GGAAACAAAGACCTCTACTTGGGAACTTTTAGCACTGAGGAAGAAGCAGCAGAAGCTTAC 1061
Query 1022 GATATAGCTGCGATAAAGTTTCGAGGTCTAAACGCGGTTACAAACTTTGAGATAAACCGT 1081
||||||||||| ||||||||| |||| || || || || || ||||| ||||| |||||
Sbjct 1062 GATATAGCTGCAATAAAGTTTAGAGGACTTAATGCAGTGACCAACTTCGAGATCAACCGG 1121
Query 1082 TACGACGTGAAAGCTATCCTAGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTAAA 1141
|||||||||||||| || |||||||| | ||| ||||| || ||||| || || ||||||
Sbjct 1122 TACGACGTGAAAGCCATTCTAGAGAGTAGCACTCTTCCCATCGGAGGAGGCGCAGCTAAA 1181
Query 1142 CGGCTCAAAGAAGCTCAAGCTCTAGAATCATCGAGAAAACGCGAGGA--A-ATGATAGCC 1198
||||||||||||||||||||||| || || || || |||||||||| | |||||||||
Sbjct 1182 CGGCTCAAAGAAGCTCAAGCTCTTGAGTCTTCAAGGAAACGCGAGGCGGAGATGATAGCC 1241
Query 1199 CTCGGATCAAATTTCCATCAGTATGGTGCAGCGAGCG-GCTCGAG-CTCTGTTGCTTCCA 1256
|| || |||| |||||| ||| |||| | | || || | || ||||| ||| |||
Sbjct 1242 CTTGGTTCAAGTTTCCA---GTACGGTGGTG-GCTCGAGCAC-AGGCTCTG--GCT-CCA 1293
Query 1257 GCTC-T-AGG-CTTCAGCTTCAACCATACCCACTAAGCATTCAACAACCTTTTGAGCATC 1313
||| | | | |||||||||||||| ||||| ||||||||||||||||| || |||| |
Sbjct 1294 CCTCATCAAGACTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACCATTAGAGCCTT 1353
Query 1314 TTC-ATCATCATCAGC-CTTT-ACTTACTCT-AC-AGAACAACAACGATATCTCTC-AGT 1367
||| ||| || |||| | | || | |||| | | ||||||||| || ||| | | |
Sbjct 1354 TTCTATC-TCTTCAGAACAATGACAT-CTCTCATTACAACAACAACAATG-CTCACGATT 1410
Query 1368 A-TCATGATT----C-CTATAGTTACATTCAGACGCAGCTTCATCTTCACCAACAACAAA 1421
|| | || | | |||| || || ||||| || |||||||| |||||||| |
Sbjct 1411 CCTCCTCTTTTAATCACCATAGCTATATCCAGACACAACTTCATCTCCACCAACAG-A-- 1467
Query 1422 CCAACAATTACTTGCAGTCTTCTAGTC-A-C-AGCAC----A-CAGCTCTACAATGCTTA 1473
||||||||||||||||| | | |||| | | || || | |||||||||||||| ||
Sbjct 1468 CCAACAATTACTTGCAG-CAAC-AGTCGAGCCAGAACTCTCAGCAGCTCTACAATGCGTA 1525
Query 1474 TCTTCAGAGCAACCCTGGTT-TGCTTCATGG-CTTTATCTCT 1513
|||||| ||||| || || | |||||||||| ||| |||||
Sbjct 1526 TCTTCATAGCAATCC-GGCTCTGCTTCATGGACTTG-TCTCT 1565
Score = 143 bits (77), Expect = 6e-33
Identities = 224/288 (78%), Gaps = 38/288 (13%)
Strand=Plus/Plus
Query 10 aaaaaaaaGGGAAATGAATTCTAACAACTGGCTT-GCTTTTCCTCTATCACC-AACTCAC 67
||||| || | ||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct 78 AAAAAGAA-GAAAATGAATTCTAACAACTGGCTTGGC-TTTCCTCTTTCACCGAAC-AAC 134
Query 68 TCTTCTTTGCCTCCTCACATTCACTCTTCACAAACTTCTCATTTCAATCTAGGTTTGGTC 127
||||||||||||||| || | | | || || | | | | || ||||||
Sbjct 135 TCTTCTTTGCCTCCT--CA-TGA---AT-AC-AA-----C----C--T-T-GGCTTGGTC 173
Query 128 AACGACAATATCGACAACCCTTTTCAAAAC-CAAGAATGGAATATGATCAATCCACACGG 186
| |||| |||| ||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 174 AGCGACCATATGGACAACCCTTTTC-AAACACAAGAGTGGAATATGATCAATCCACACGG 232
Query 187 TGGAGGCGGCGA--A-GGTGGAGAGGTTCCAAAAGTGGCTGATTT-CTTAGGAGTGAGCA 242
|||||| || || | || |||||||||||||||||||| ||||| || || |||||||
Sbjct 233 TGGAGGAGGAGATGAAGGAGGAGAGGTTCCAAAAGTGGCCGATTTTCTC-GGTGTGAGCA 291
Query 243 AATCGGGGGATCATCA-TCCCGACCACAACCTCGTACCTTACAACGAC 289
|| ||| || | || ||| ||||| | | ||| |||||||||||
Sbjct 292 AACCGGACGAAAACCAATCCA-ACCAC--C-TAGTAGCTTACAACGAC 335
> AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315529-3320202
FORWARD LENGTH=2471
Length=2471
Score = 268 bits (145), Expect = 1e-70
Identities = 353/451 (78%), Gaps = 24/451 (5%)
Strand=Plus/Plus
Query 702 GTGGGTATGACAAAGAAGAGAAAGCAGC-CAGAGCATATGATCTAGCTGCACTTAAATAT 760
|||| |||||||||||||| || ||||| | |||| || ||| |||| || || |||||
Sbjct 1436 GTGGATATGACAAAGAAGATAAGGCAGCTC-GAGCTTACGATTTAGCAGCTCTGAAATAC 1494
Query 761 TGGGGTCCCT-CTACTACTACCAACTTT-CCGATAACTAATTACGAGAAGGAAGTAGAGG 818
||| | || || |||| ||||| ||| || || || |||||| ||| ||||| ||||
Sbjct 1495 TGGAAT-GCTACTGCTACCACCAA-TTTCCCTATTACGAATTACTCGAAAGAAGTGGAGG 1552
Query 819 AGATGAAAAACATGA-CGAGACAAGAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGA 877
| ||||| |||||| | || |||||||| | || || | || ||||| ||||||||
Sbjct 1553 AAATGAAGCACATGACCAAG-CAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGT 1611
Query 878 TTCTCGCGTGGTGCATCGATGTATCGTGGAGTAACAAGGCATCATCAACATGGAAGATGG 937
||||| | || || ||||| || || || || ||||||||||||||||| ||| | |||
Sbjct 1612 TTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGG 1671
Query 938 CAAGCAAGGATTGGCCGAGTTGCTGGAAACAAAGATCTATAC-TTGGGAACATTCAGCA- 995
|||||||||||||||||||||||||| ||||||||||| ||| |||| ||| || |||
Sbjct 1672 CAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGG-AACCTTT-GCAA 1729
Query 996 CGGAGGAAGAAGCAGCAGAAGCTTATGATATAGCTGCGAT-AAAGTTTC-GAGGTCTAAA 1053
|||| || |||||||| ||||| ||||| ||||| || || ||| || | |||| ||||
Sbjct 1730 CGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAA-TT-CAGAGGAATAAA 1787
Query 1054 CGCGGTTACAAACTTTGAGATAAACCGTTACGACGT-GAAAGCTATCCTAGAGAGCAACA 1112
||| || || ||||||||||| |||||||||||||| ||| || ||| | || || |
Sbjct 1788 CGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGAA-GCCATCAT-GA-AG-AGTG 1843
Query 1113 CACTTCCTATAGGAGGTGGTGCGGCTAAACG 1143
||||||| || || |||||| ||||||||
Sbjct 1844 CACTTCCCATCGG---TGGTGCAGCTAAACG 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5