BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923597
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51220.1 | Symbols: WIP5 | WIP domain protein 5 | chr1:18989... 1528 0.0
> AT1G51220.1 | Symbols: WIP5 | WIP domain protein 5 | chr1:18989751-18992149
REVERSE LENGTH=1303
Length=1303
Score = 1528 bits (827), Expect = 0.0
Identities = 967/1031 (94%), Gaps = 24/1031 (2%)
Strand=Plus/Plus
Query 1 TTTGTCTTCTCCTCAAAGTCATGTCTAATCCAGCTTGTTCCAATCTCTTCAACAATGGAT 60
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 96 TTTGTCTTCTCCTCAGAGTCATGTCTAATCCAGCTTGTTCGAATCTCTTCAACAATGGAT 155
Query 61 GTGACCATAATAACTTCAACTATTCCACTTCTCTCTCTTACATTTACAACTCTCACGAAA 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 156 GTGACCATAATAGCTTCAACTATTCCACTTCTCTCTCTTACATTTACAACTCTCACGGTA 215
Query 121 G---C---T--TCT-AT------TACCCTAATTACATTAATCATACTCCTACCACTTTCA 165
| | | ||| || |||||||||||||||||||||||| |||||||| ||
Sbjct 216 GCTACTATTACTCTAATACCACAAACCCTAATTACATTAATCATACTCATACCACTTCCA 275
Query 166 CTTCCCCTAACTCACCTCCACTAAGAGAAGCTCTTCCTCTTCTTAGCTTAAGCCCCATAA 225
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CTTCCCCTAACTCACCCCCACTAAGAGAAGCTCTTCCTCTTCTTAGCTTAAGCCCCATAA 335
Query 226 GGCACCAAGAACAACAAGATCAACACTATTTCATGGACACCGATCAAATCAGCTCTTCAA 285
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 336 GGCACCAAGAACAACAAGACCAACACTATTTCATGGACACCCATCAAATTAGCTCTTCAA 395
Query 286 ACTTTCTTGATGATCCTCATGTTACTGTGGATCTTCATTTAGGGCAACCAAACTACGGTG 345
|||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 396 ACTTTCTTGATGATCCTCTTGTGACTGTGGATCTTCATCTAGGGTTACCAAACTACGGTG 455
Query 346 TTGGAGAGAACATTAGGAGCTATATTGCTCCTGATACAACCAC-G--GA-C--GATCAAG 399
|||| |||| |||||||||| |||||||||||||| ||||||| | || | |||||||
Sbjct 456 TTGGTGAGAGCATTAGGAGCAATATTGCTCCTGATGCAACCACGGACGAGCAAGATCAAG 515
Query 400 ATCATGACCGAGGTGTAGAAGTCACAGTTGAGTCCTACCTTCATGATGATGATG---ATC 456
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 516 ATCATGACCGAGGAGTAGAAGTCACAGTTGAGTCCCACCTTGATGATGATGATGATCATC 575
Query 457 ATGGAGATCTACACAGAGCTCATCACTATTGGATTCCTACTCCTTCTCAGATTTTGATTG 516
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 576 ATGGAGATCTACACAGAGGTCATCACTATTGGATTCCTACTCCTTCTCAGATTTTGATTG 635
Query 517 GTCCTACACAGTTCTCTTGTCATCTTTGCCTCAAGACATTCAACAGATACAACAACATGC 576
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 636 GTCCTACACAGTTCACTTGTCCTCTTTGCTTCAAGACATTCAACAGATACAACAACATGC 695
Query 577 AGATGCACATGTGGGGACACGGCTCACAATACAGAAAGGGACCAGAATCCTTAAGAGGAA 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AGATGCACATGTGGGGACACGGCTCACAATACAGAAAGGGACCAGAATCCTTAAGAGGAA 755
Query 637 CCCAACCAACAGGAATGCTAAGACTACCATGTTTCTGCTGTGCACCAGGCTGCAAGAACA 696
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 756 CCCAACCAACAGGAATGCTAAGACTACCATGTTTCTGCTGTGCACCCGGTTGCAAGAACA 815
Query 697 ACATTGACCACCCGCGAGCCAAGCCTCTTAAGGACTTTCGAACCCTTCAAACACATTACA 756
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 816 ACATTGACCACCCACGAGCCAAGCCTCTTAAGGACTTTCGAACCCTCCAAACACATTACA 875
Query 757 AACGTAAACACGGGTCTAGACCATTTGCTTGTCGTAGGTGTGGTAAGGCCTTTGCAGTGA 816
|||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 876 AACGTAAACATGGGTCTAAACCATTTGCTTGTCGTATGTGTGGTAAGGCCTTTGCAGTGA 935
Query 817 AAGGAGATTGGAGAACGCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCTCTTGTGGCT 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 AAGGAGATTGGAGAACGCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCTCTTGTGGCT 995
Query 877 CTGATTTTAAGCACAAGAGGTCGCTTAAGGACCACGTCAAGGCCTTTGGGAGTGGTCATG 936
| |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 996 CGGATTTTAAGCACAAGAGGTCGCTTAAGGACCATGTCAAGGCCTTTGGAAATGGTCATG 1055
Query 937 TTCCTTGTGGGATTGATAGTTTTGGAGGAGATCATGAGGACTACTATGAGGCTGCTTCTG 996
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1056 TTCCTTGTGGGATTGATAGTTTTGGAGGAGATCATGAGGACTACTATGATGCTGCTTCTG 1115
Query 997 ATATCGAGCAA 1007
|||||||||||
Sbjct 1116 ATATCGAGCAA 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51238829940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5