BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923599
Length=425
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51240.1 | Symbols: | Plant self-incompatibility protein S1... 577 3e-164
AT1G51250.1 | Symbols: | Plant self-incompatibility protein S1... 510 3e-144
> AT1G51240.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:19000509-19000892 REVERSE LENGTH=384
Length=384
Score = 577 bits (312), Expect = 3e-164
Identities = 361/385 (94%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 21 ATGTATTTTGGGCTAAATGAAGCTTGCaaaaaaaaTCATGTAGTGATTCATAACGAACTC 80
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTATTTTGGGCAAAATGAAGCTTGCAAAAAAAATCATGTAGTGATTCATAACGAACTC 60
Query 81 GGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCATAGAGCGTACACCTTCA 140
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 61 GGTCCTGGTATTGATCTCAACATTGCATGCCGACAATTCAGCATAGAGCGCACACCTTCA 120
Query 141 ATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATGTCATTGAATTCGAAGATAATAAT 200
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 121 ATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTCGAGGATAATAAT 180
Query 201 CAGCTACCTCATGGTGAAAAATGGTATTGTATGCTTAGTCATGGGACTAGGCCAAAATAT 260
||||||||||||||||||| |||||||||| |||||||||| || ||||| ||||| |||
Sbjct 181 CAGCTACCTCATGGTGAAAGATGGTATTGTCTGCTTAGTCACGGTACTAGACCAAAGTAT 240
Query 261 TGGTATGATATCGAAGTATATCGTCAAGGCTATTATCCTCGATGTGGTCAGCTACGCTCA 320
||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 241 TGGTATGATATTGAAGTATATCGTCAAGGCTATTATCCAAGTTGTGGTCAGCTACGCTCA 300
Query 321 TGGATAGCCAAA-ACGGATGGGATTTGGTTTACAAGAAGATATAATAGCCCGCCGGGACA 379
||||| || ||| | | |||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 301 TGGATTGCTAAACAAG-ATGGAATTTGGTTTACAAGAAGATATGATAGCCCGCCAGGACA 359
Query 380 TGTTCTTAATTGGAAAATTCAGTAA 404
|||||||||||||||||||||||||
Sbjct 360 TGTTCTTAATTGGAAAATTCAGTAA 384
> AT1G51250.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:19001544-19002215 REVERSE LENGTH=672
Length=672
Score = 510 bits (276), Expect = 3e-144
Identities = 358/398 (90%), Gaps = 4/398 (1%)
Strand=Plus/Plus
Query 9 TTAGTTACTACTATGTATTTTGGGCTAAATGAAGCTTGCaaaaaaaaTCATGTAGTGATT 68
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 88 TTAGTTACAACTATGTATTTTGGGATAAATGAAGCTTGCAAAAAAAATCATGTAGTAATT 147
Query 69 CATAACGAACTCGGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCATAGAG 128
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 148 CATAACGAAATCGGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCCCAAAA 207
Query 129 CGTACACCTTCAATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATGTCATTGAATTC 188
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 208 CGCACACCTTCAATGTTTCACACCCTAAAGTACAAAGATCCTTTTTACATCATTGAGTTC 267
Query 189 GAAGATAATAATCAGCTACCTCATGGTGAAAAATGGTATTGTATGCTTAGTCATGGGACT 248
| || || |||||||||||||| ||||| |||||||||||| || ||||||| || ||
Sbjct 268 GCGGACAACAATCAGCTACCTCACGGTGAGAAATGGTATTGTCTGATTAGTCACGGAACA 327
Query 249 AGGCCAAAATATTGGTATGATATCGAAGTATATCGTCAAGGCTATTATCCTCGATGTGGT 308
|| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 328 AGACCAAAATATTGGTTTGATATTGAAGTATATCGTCAAGGCTATTATCCTCGATGTGGT 387
Query 309 CAGCTACGCTCATGGATAGCCA-AAACGGATGGGATTTGGTTTACAAGAAGATATAATAG 367
||||||||||||||||| || | ||| ||||||||||||||||||||||| |||| ||||
Sbjct 388 CAGCTACGCTCATGGATTGCTAGAAA-GGATGGGATTTGGTTTACAAGAAAATATCATAG 446
Query 368 CCCGCC-GGGACATGTTCTTAATTGGAAAATTCAGTAA 404
|| || ||| || || ||| |||||||||| ||||||
Sbjct 447 TCCACCAGGG-CACGTACTTGATTGGAAAATCCAGTAA 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20157367349
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5