BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923604
Length=556
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 348 4e-95
AT5G05110.1 | Symbols: | Cystatin/monellin family protein | ch... 126 2e-28
> AT3G53320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G37070.1);
Has 11044 Blast hits to 5993 proteins in 551 species: Archae
- 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants
- 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI
BLink). | chr3:19769176-19772369 REVERSE LENGTH=1974
Length=1974
Score = 348 bits (188), Expect = 4e-95
Identities = 231/251 (92%), Gaps = 5/251 (2%)
Strand=Plus/Plus
Query 227 AACTGTCCAGCATGATGGAGAA-CAATCACAAGAGTGGG-AGAAAGCTTTACCTACCATT 284
||||||||||||||||||| || |||||| ||||||||| ||||||||||||| ||||||
Sbjct 432 AACTGTCCAGCATGATGGA-AAGCAATCATAAGAGTGGGAAGAAAGCTTTACCGACCATT 490
Query 285 ATAGAGGATATTAATAGATCTACGGAATCCATTTCTACATTTCAAAGTGACTGCACTGTG 344
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 491 CTAGAGGATATTAATAGATCTACAGAATCCATTTCTACATTTCAAAGTGACTGCACTGTG 550
Query 345 GAGAATAGTCAGGAGTTTGTTTTGTTTGAGGATGTAAGAGCGTCTATTCAAAGGTCTGCT 404
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 551 GAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTTAGAGCATCTATTCAAAGGTCTGCT 610
Query 405 AAAACATCTGATGCTGCAACGCCCGGGAAAAATAATGAAGT-GAGAGAAACAGAAGTAGC 463
||||||||||||| |||||| |||||||||| ||||| || ||||| |||||| |||||
Sbjct 611 AAAACATCTGATGTTGCAACACCCGGGAAAAGTAATGT-GTTGAGAGCAACAGACGTAGC 669
Query 464 AATGACCCCAA 474
||| | |||||
Sbjct 670 AATTAGCCCAA 680
Score = 159 bits (86), Expect = 2e-38
Identities = 186/229 (81%), Gaps = 28/229 (12%)
Strand=Plus/Plus
Query 1 CGATGGCCTTGGTTTGATTGATGTCGCT-TCTGAAGACGATAGCCTTCTCTTCTCCTCCT 59
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 130 CGATGGCCTTGGTTTGATTGATGTCGCTGT-TGAAGACGATAGCCTTCTCTTCTCCGAGT 188
Query 60 TTCCCGACCCACCCAGCTACGAGTTTTCCGGCAGATAAGGATGAAAATTGTTTGAAGGAT 119
|| |||| || || || || | | | | || ||| | ||||||||||
Sbjct 189 TTTCCGAG--AC--AGATA--AG------G--A--T--G-AT-AAA-T-GTTTGAAGGAG 226
Query 120 GACAAAGATCTAAATTTCATGAGGGATACACTA-TATTGTGATGATGAGATA-TTGGTTT 177
|| ||||||||||| |||||||||||||||| | |||||||||||||||||| ||| ||
Sbjct 227 GATAAAGATCTAAACTTCATGAGGGATACAC-AGTATTGTGATGATGAGATACTTGCTT- 284
Query 178 CTACAATTGAAGAGAAGGAAGAGGTACTTCAACCTCATGAGTCGCCTGA 226
|| | ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 285 CTTCTGTTGAAGAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGA 333
> AT5G05110.1 | Symbols: | Cystatin/monellin family protein |
chr5:1507419-1508867 REVERSE LENGTH=997
Length=997
Score = 126 bits (68), Expect = 2e-28
Identities = 76/80 (95%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 474 ATGGATGAACTTCAAGCAGCTTCAGGAGTTCAAGAATGTTATCCCCTCCTTCACTATCTC 533
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 465 ATGGATGAACTTTAAGCAGCTTCAGGAGTTCAAGAATATTATCCCCTCCTTCACTATCTC 524
Query 534 TGACCTTGGCTTGAAATCAG 553
|||||||||||| ||| |||
Sbjct 525 TGACCTTGGCTTCAAACCAG 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26674332057
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5