BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923607
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51260.1 | Symbols: LPAT3 | lysophosphatidyl acyltransferase... 1738 0.0
AT1G51310.1 | Symbols: | transferases;tRNA (5-methylaminomethy... 110 6e-23
> AT1G51260.1 | Symbols: LPAT3 | lysophosphatidyl acyltransferase
3 | chr1:19003376-19005641 REVERSE LENGTH=1344
Length=1344
Score = 1738 bits (941), Expect = 0.0
Identities = 1076/1140 (94%), Gaps = 14/1140 (1%)
Strand=Plus/Plus
Query 16 TCTCATACATGACA-ATCCCTGCTGCTCTTGTCTTTATCCCTGTTGGCATCCTCTTCTTG 74
||||| |||||| | |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 122 TCTCAGACATGA-AGATCCCTGCGGCTCTTGTCTTTATCCCTGTTGGTGTCCTCTTCTTG 180
Query 75 GTCTCAGGGCTCATCGTCAACAGCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 134
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 240
Query 135 TCAAGAAGTTTGTATAGAAGAATCAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 194
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAAGAAGTTTGTATAGAAGAATAAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300
Query 195 ATATGGTTGTCTGATTGGTGGGCTTGTATAAAGATCAATTTATACGCT-GATGCAGAGAC 253
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACG-TCGATGCAGAGAC 359
Query 254 TCTAGAGTTAATTGGGAAAGAACATGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 313
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TCTAGAGTTAATTGGGAAAGAACACGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419
Query 314 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGCAGGTTGTCTTGGAAGCTCTTTAGCCAT 373
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGTAGGTTGTCTTGGAAGCTCATTAGCCAT 479
Query 374 CATGGCA-AAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATT 432
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAT-GAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATT 538
Query 433 ACATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAAC 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAAC 598
Query 493 GACTTGAGGACTTTCCTATGACATTTTGGCTAGCTCTTTTCGTTGAAGGAACTCGTTTCA 552
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 GACTTGAAGACTTTCCAATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCA 658
Query 553 CTCAAGAGAAGCTTGAAGCTGCTCAAGATTACGCCTCTATCAGAAGCTTACCATCACCTC 612
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 659 CTCAGGAGAAGCTTGAAGCTGCTCAAGAGTACGCCTCTATCAGAAGCTTACCGTCTCCTC 718
Query 613 GAAATGTTCTGATTCCTCGTACAAAGGGATTTGTTTCAGCGGTATCTCAAATACGGTCAT 672
|||||||| |||||||||||||||||||||||||||| || || ||| ||||||||||||
Sbjct 719 GAAATGTTTTGATTCCTCGTACAAAGGGATTTGTTTCGGCAGTGTCTGAAATACGGTCAT 778
Query 673 TTGTTCCTGCAATTTATGACTGCACCTTTACCGTTCATAACAATCAGCCTACACCAACTC 732
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 779 TTGTTCCTGCAATATATGACTGTACCTTAACCGTTCATAACAATCAGCCTACACCAACTC 838
Query 733 TGCTTAGGATGTTCAGTCGACAATCATCTGAGGTAAATTTGCAGATGAGACGTCACAAAA 792
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 TGCTTAGGATGTTCAGTGGACAATCATCTGAGATAAATTTGCAGATGAGACGTCACAAAA 898
Query 793 TGAGCGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCA 852
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGAGTGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCA 958
Query 853 CCAAGGATGCTCAACTTGAGAAATACTTCACAAAAAACGTATTT-AGCGACTTGGACGTT 911
||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||
Sbjct 959 CCAAGGATGCTCAACTTGAGAAATACTTCACAAAAGACGT-TTTCAGCGACTTGGAAGTT 1017
Query 912 CACCAAATCAACCGGCCAATCAAACCATTGATCGTGGTCATCATTTGGTT-GTGTCTTC- 969
|||||||| |||||||||||||| ||||| |||||||||||||||||||| | || |||
Sbjct 1018 CACCAAATTAACCGGCCAATCAAGCCATTAATCGTGGTCATCATTTGGTTAG-GT-TTCC 1075
Query 970 TTATATACGGTGGTTTTAAGCTATTCCAATGGCTTTCCTTAGTGGCCTCGTGGAAGATCA 1029
|| ||| ||||||||| |||||| | ||||||||||| |||||||||||||||||||||
Sbjct 1076 TTGTATTCGGTGGTTTCAAGCTACTGCAATGGCTTTCAATAGTGGCCTCGTGGAAGATCA 1135
Query 1030 TTCTTTTGTTTGTGTTCTTCTTGGTGATTGCAACTATAACAATGCAAGTACTTGTTCAAA 1089
||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 1136 TTCTTTTGTTTGTGTTCTTCTTGGTCATTGCAACTATAACAATGCAAATACTAATTCAAT 1195
Query 1090 CGTCTGAGTCACAACGTTTCA-CTCCTGCCAAGAGACCTTTAGAAGAACAGCTTATTTCT 1148
|||||||||||||||||| || |||| |||||||||||| || |||||||||||||||||
Sbjct 1196 CGTCTGAGTCACAACGTT-CAACTCCAGCCAAGAGACCTCTACAAGAACAGCTTATTTCT 1254
> AT1G51310.1 | Symbols: | transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases
| chr1:19018979-19021804
REVERSE LENGTH=1769
Length=1769
Score = 110 bits (59), Expect = 6e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 1284 GTCCGACATGGGCCTAGCTTCTACAGCTGCAGTTTTGAAATGGAAGCAGACGGAGATGTT 1343
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1231 GTCCGACATGGGCCTGGCTTCTACAGCTGCAGTTTTGAAATGGAAGGAGACGGAGATGTT 1290
Query 1344 CCAGTTGCTGCA 1355
|||||| ||||
Sbjct 1291 GCAGTTG-TGCA 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76907234940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5