BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923615
Length=2045
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51350.1 | Symbols: | ARM repeat superfamily protein | chr1... 3317 0.0
> AT1G51350.1 | Symbols: | ARM repeat superfamily protein | chr1:19035755-19039341
FORWARD LENGTH=2441
Length=2441
Score = 3317 bits (1796), Expect = 0.0
Identities = 1963/2046 (96%), Gaps = 2/2046 (0%)
Strand=Plus/Plus
Query 1 ACCGGAGAAACTAAATCTCCGCCATGCCTACCACCAcctcctccgcctcttcctcctcct 60
|||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||
Sbjct 74 ACCGGAGAAACTAAATCTCCGCCATGCCTACCACCACCACCTCCTCCGCTTCTTCCTCCT 133
Query 61 cctccgtctccGGTAACAATCGTCAAGCCGATGTATTCTCTCGTCTCGCTTCTTCTGACC 120
|||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 134 CCTCTGCCTCCGGTAACAATCGTCAATCCGATGTATTCTCTCGTCTCGCTTCTTCTGACC 193
Query 121 CTGAAGTCAAGCTTAAGGCCCTTCGTGAGGTCAAAAACCAGATTATCGGAAATCGCACAA 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 194 CTGAAGTCAAGCTTAAGGCCCTTCGCGAGGTCAAAAACCAGATTATCGGAAATCGTACAA 253
Query 181 AAAAGCTCTCTTTCCTCAAACTCGGAGCTATTCCCGCCATAGCTTCTGTTCTCGCTGATG 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 AAAAGCTCTCTTTTCTCAAACTCGGAGCTATTCCCGCCATAGCTTCTGTTCTCGCTGATG 313
Query 241 CTGACGATTCTGATAAATGTAATAACATCCTCGTCCAATCTGCGGCGGCTCTTGGGAGTT 300
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 314 CTGACGATTCTGATGAATGTAATAACATCCTCGTGCAATCTGCGGCGGCTCTTGGCAGTT 373
Query 301 TCGCTTGTGGGTTTGAAGCCGGAGTTCAAGCTGTTCTTGACGCCGGAGTTTTCCCTCATC 360
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 374 TCGCTTGTGGGTTTGAAGCCGGTGTTCAAGCTGTTCTTGACGCCGGCGTTTTCCCTCATC 433
Query 361 TTCTTCGTCTTCTTACTAATCCTGACGAAAAGGTAGTAGATGCAGGGGCTCGTTCGCTTA 420
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 434 TTCTTCGTCTTCTCACTAATACTGACGAAAAGGTAGTAGATGCGGGGGCTCGTTCGCTTA 493
Query 421 GAATGATATTTCAATCTAATCAAGCTCCAAAGTATGATTTTCTTCAAGAGAAAAACATGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GAATGATATTTCAATCTAATCAAGCTCCAAAGTATGATTTTCTTCAAGAGAAAAACATGG 553
Query 481 AGTTTCTTTTCTCGTTGTTGAATAGCGAGAATGAGAATGTTAGTGGGCTTGGTGCGAGCA 540
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 554 AGTTTCTTTTCTCGTTGTTGAATAGTGAGAATGAGAACGTTAGTGGGCTTGGTGCGAGTA 613
Query 541 TTATTGCTCATGCTTGTGGAACAAGTGTAGAGCAACGGGTTCTTTGTGAAGCTGGTGTCT 600
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 614 TTATCGCTCATGCTTGTGGAACAAGTGTAGAGCAACGGGTTCTCTGTGAAGCTGGTGTCT 673
Query 601 TGGAGAAGCTTGTTATCCTTCTTGATGGTTCGTTTA-GCCAAAGAGAAGCTTGTCTTGAA 659
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 674 TGGAGAAGCTTGTTATCCTTCTTGATGGTTC-TTTAAGCCAAAGAGAAGCTTGTCTTGAA 732
Query 660 TCTTTAGCGACGGTTTTGAAGAATAATCCTGAAGCTGTTTCGGACTTTGTTGGACTTGAG 719
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 733 TCTTTAGCTACGGTTTTGAAGAATAATCCTGAAGCTGTTTCTGATTTTGTTGGACTTGAG 792
Query 720 TCTGGGAAATATTTTAATTCCGTGACTGAGTTAACAAAGGATAGGTATCCGAGGACTAGG 779
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 793 TCTGGGAAGTATTTTAATTCTGTGACTGAGTTAACAAAGGATAGGTATCCGAGGACTAGG 852
Query 780 CTGCTTTCTTGTCTCTGCTTAGTTGTCATATACAACACTTCTCCGTCTTATTTCGTAAAC 839
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 853 CTGCTTTCTTGTCTTTGCTTAGTTGTCATATACAACACTTCTCCATCTTATTTCATAAAC 912
Query 840 ATGGGAACCAAATCAAGTTTGATAACTACTCTGCTTGAGCTTCTTAATGACCCTGGTCAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 ATGGGAACCAAATCAAGTTTGATAACTACTCTGCTTGAGCTTCTTAATGACCCTGGTCAA 972
Query 900 TCTGGAGATGATGCTGCCTTGGGTTTATCTTGTCTTATTGCGGAAAAAGAGGATTTACAA 959
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 973 TCTGGAGATGATGCTGCCTTGGGTTTATCCTGTCTGATTGCGGAAAAAGAGGATTTACAA 1032
Query 960 CAGTTAGCTTACGAGGCTGATGCGATCAAGAATATTGTTGACATCTTGAAGACAGGTAGT 1019
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1033 CAGTTAGCTTACGAGGCCGATGCAATCAAGAATATTGTTGAGATCTTGAAGACAGGTAGT 1092
Query 1020 GAGCTCCAGCCTAGACGTCTTGAGGGTTTGTTTTTGTCTCTTGCTGAATTGTGCTCAAAG 1079
||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1093 GAGCTCCAGTCTAAACGTCTTCAGGGTTTGTTTTTGTCTCTAGCTGAATTGTGCTCAAAG 1152
Query 1080 CTGGAGGATTGCAGGTGTAGCTTCCTGTCATTGCAGGTGTTAGACCTGCTGACTAATGCG 1139
|| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1153 CTAGAGGATTGCAGATGTAGCTTCCTGTCATTGCAGGTATTAGACCTGCTGACTGATGCG 1212
Query 1140 CTAAGACACAAAGATGCTGATGTAAGAGCTGCGGCGTGCATTTGCTTTAGAAACGCTGCT 1199
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1213 CTAAGACACAAAGATGCTGATGTAAGAGCTGCGGCATGCATTTGCTTTAGAAACGCTGCT 1272
Query 1200 CGATCAGTCAAGAGTTTGAGTGCAGGACGATTCAACAGCGATCATGCTATGCTTCCTTTG 1259
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1273 CGATCAGTCAAGAGTTTGAGTGCAGGACGATTCAACAGCGATCATGTTATGCTTCCTTTG 1332
Query 1260 GTTCAGTTATTGCATGATCCATCTTCCTCTGTCCAGGTTGCAGTTCTTGGCGCTCTGAGC 1319
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1333 GTTCAGCTATTGCATGATCCATCTTCCTCTGTCCAGGTTGCAGTTCTTGGTGCTCTGAAC 1392
Query 1320 AATATAGTATTGGATTTTTCATCACCAAAGTCATCATTTATCGAGTATGGAGGGATAAAA 1379
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1393 AATATAGTAATGGATTTTTCATCACCGAAGTCATCATTTATCGAGTATGGAGGGATAAAA 1452
Query 1380 CAGCTTATTGAGTTGTCAAAATCAATGGATCTAAATGCTCGGTGTAGCGCTTTACGGGCT 1439
||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 1453 CAGCTTACTGAGTTGTCAAAATCAATGGATCCAAATACTCGGTGTAGCGCTTTGCGGGCT 1512
Query 1440 TTAAGGAACCTCATGTTCCTTGCCGACAATAAACGTAAAGAACTCTTTTATTCAGACGTC 1499
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1513 TTAAGGAACCTCATGTTCCTTGCCGACATTAAACGTAAAGAACTCTTTTATTCAGACGTT 1572
Query 1500 AAGGCTCAAGGATTTGCTTGCCTCATTAGTGATCCTGAGCCCCCAGTACAAGAGCAAGCT 1559
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1573 AAGGCTCAAGGACTTGCTTGTCTCATTAGTGATCCTGAGCCCCCAGTGCAAGAGCAAGCT 1632
Query 1560 TTGGCCCTCCTCCGTAATCTTGTTGACGGATGTATCAGCTCAATCGAGTTTGTATTTGAT 1619
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1633 TTGGCCCTCCTCCGTAATCTTGTTGATGGATGTATCAGCTCTATCGAGTTTGTATTTGAT 1692
Query 1620 GAAGATGGTATTATCTTAGATACTGTTGGGAGGCAATTGAGAAAAGCTCCGCAAGCTCAA 1679
||||||||| ||||||||||||||||||||||||||||||| |||||||| || || |||
Sbjct 1693 GAAGATGGTCTTATCTTAGATACTGTTGGGAGGCAATTGAGGAAAGCTCCACAGGCACAA 1752
Query 1680 ATGGCAATACAGGGAATGTATGTGCTCGCGAATGTAGCGAGTGGGACTGAGTTACATAAA 1739
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1753 ATGGCAATACAGGGAATGTATGTGCTCACGAATGTAGCGAGTGGGACTGAGTTACATAAA 1812
Query 1740 GAAGCAGTTATGCAGCAACTGTTTCCCCAAGCCAAAGCTGGATCAGAGAATTTCATGCTT 1799
||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1813 GAAGCGGTTATGGAGCAACTGTTTCCTCAAGCTAAAGCTGGATCAGAGAATTTCATGCTT 1872
Query 1800 AAGTTTTTGCAGAGTGACGAGAGCCAGTTACGGTCAGCAACAGTCTGGACAATCATAAAC 1859
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1873 AAGTTTTTGCAGAGCGACGAGAGCCAGTTACGGTCAGCAGCAGTCTGGACAATCATAAAC 1932
Query 1860 CTCATTAGTCCTTCAAGTCCAGGTGCATTTGATCGGCATGTGAAATTACGGAATGCGGGT 1919
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1933 CTCATTAGTCCTTCAAGCCCCGGTGCATTTGATCGGCATGTGAAATTACGGAATGCGGGT 1992
Query 1920 ATCATTCCCCAGTTAAAAAACATGGTCAATGACGCTTGCCTCGATGTTAAGATTCGCATC 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 ATCATTCCCCAGTTAAAAAACATGGTCAATGACGCTTGCCTCGATGTTAAGATTCGCATC 2052
Query 1980 AGAACCGTATTAGGCCAGTCCATGTCTTTTGGCGATAATTACTAAACACAGAGACATTAC 2039
|| || ||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 2053 AGGACTGTATTAGGCCAGTCCATGTCTTTTGGCGATAATTACTAAACACAGCGATATTGC 2112
Query 2040 TTTTCC 2045
||||||
Sbjct 2113 TTTTCC 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101354900355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5