BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923618
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51360.1 | Symbols: ATDABB1, DABB1 | dimeric A/B barrel doma... 865 0.0
AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 224 1e-57
> AT1G51360.1 | Symbols: ATDABB1, DABB1 | dimeric A/B barrel domainS-protein
1 | chr1:19044184-19044900 FORWARD LENGTH=717
Length=717
Score = 865 bits (468), Expect = 0.0
Identities = 584/638 (92%), Gaps = 15/638 (2%)
Strand=Plus/Plus
Query 1 TCTC-TCTCCGTCGTCGTTACCATGTCTTCAATCGTCGAGCACGTCGTTCTATTCAAGCT 59
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCTCTTCTCCGTCGTCGTAACCATGTCTTCAATCGTCGAGCACGTCGTTCTATTCAAGCT 62
Query 60 ---C-A--ACGATGTTGACTCCAACAAGATAAACTCCATGGTCAACGGACTCAACAAACT 113
| | |||| ||||||||| |||||| |||||||||||||||||| ||||| ||||
Sbjct 63 CAACGACGACGACGTTGACTCCGGCAAGATCAACTCCATGGTCAACGGAATCAACGAACT 122
Query 114 CGTCAATCTCAACCAGGTTCTTCACCTCT-CTTGCGGTTCTATCCACCGCCTTAGCTCCA 172
||||||||| |||| || |||||||||| | |||||||| ||||||||||||| | | |
Sbjct 123 AGTCAATCTCGACCAAGTGCTTCACCTCTAC-TGCGGTTCAATCCACCGCCTTATCACGA 181
Query 173 CCACCGCCTCCGACTTCACTCACGTCCTTCATAGCCGTTACAGATCCAAGGAAGATCTCA 232
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 182 CCACCGCCTCCGACTTCACTCACGTCCTTCATAGCCGTTACAGATCCAAAGAAGATCTCA 241
Query 233 ACTCTTACGCAATCCATCCCGATCACGTTCGTGTTGTCAAGGAATCTGAATCGATTCGCG 292
|| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 242 ACGCTTACGCTATACATCCCGATCACGTTCGTGTTGTCAAGGAATCAGAATCGATTCGCG 301
Query 293 AAGATATCATGGCCGTTGATTGGATCGCCGATCAAGTTCCCGGAA-CCCTAGCACCGCCT 351
||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||
Sbjct 302 AAGATATCATGGCCGTTGATTGGATCGCCGAACAAGCTCC-GGAAGCCCTAGCACCGCCT 360
Query 352 CCTGGTTCAGTTGGTAAAATCACGCTTCTCAAGTTGAAAGAGAATGTC-TCCGATGAACC 410
| ||||||| ||||||||||||||||||| || ||||||||||||||| | || ||| |
Sbjct 361 CTTGGTTCAATTGGTAAAATCACGCTTCTTAAATTGAAAGAGAATGTCATG-GAAGAAGC 419
Query 411 AAAATTGGAGATTATGGAAGTGATTAAGGAGAAATTTCAAGGA-TGTGATCAGATTACCG 469
||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||| |
Sbjct 420 GAAATTGGAGATTATGGAAGTGATGAAGGAGAAATTTGAAGGAAT-TGATCAGATTACTG 478
Query 470 TTGGAGAAAACTTTTCTCCGGGGAGAGCTAAAGGTTTCTCTATTGGATCGGTTTCGTATT 529
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 479 TTGGAGAAAACTTTTCTCCGGGGAGATCTAAAGATTTCTCTATTGGATCGATTTCGTATT 538
Query 530 TTAGGGATTTGGGTGAAATTGAAGCTGTGGATGATCAGATGAAGTTGCAGAAGGATAAGA 589
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 539 TTAGGGATTTGGGTGAAATTGAGGCTGTGGATGATCAGATGAAGTTGCAGAATGATAAGA 598
Query 590 TTCGTGATTATATTGATGATACCATTGTTGTTGAGTTC 627
||||||||||| ||||||||||||||||||||||||||
Sbjct 599 TTCGTGATTATGTTGATGATACCATTGTTGTTGAGTTC 636
> AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:19045212-19047453 FORWARD LENGTH=1707
Length=1707
Score = 224 bits (121), Expect = 1e-57
Identities = 152/167 (91%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 630 GAGAATCAATGTCAATGAGTTTATTGATGTTGTGATTGATGCACCTCTGCTCCAGTGTGT 689
|||| || || |||||||||||||||| ||||||||| |||||||||| ||||||||| |
Sbjct 723 GAGACTCGATATCAATGAGTTTATTGACGTTGTGATTTATGCACCTCTACTCCAGTGTCT 782
Query 690 GAGGGCTAAGATGTACTCAACAAAGAACTTTCAGATCATCAATTCGGGTTTCCCTGCCAA 749
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 783 GAGGGCTAAGATGTACTCAACAAAGAACTTTCAGATCATCAGTTCGGGTTTCCCTGCCAA 842
Query 750 ACTAGATATTGATTTCCTCTCTACTAGTGTGTGAGATACCATAAAAA 796
|||||||||||||||| || |||| ||| | ||||||||| |||||
Sbjct 843 ACTAGATATTGATTTCGTCAATACTGGTG-G-GAGATACCAAAAAAA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5