BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923625
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01370.1 | Symbols: HTR12, CENH3 | Histone superfamily prote... 710 0.0
> AT1G01370.1 | Symbols: HTR12, CENH3 | Histone superfamily protein
| chr1:143564-145650 FORWARD LENGTH=909
Length=909
Score = 710 bits (384), Expect = 0.0
Identities = 517/580 (89%), Gaps = 14/580 (2%)
Strand=Plus/Plus
Query 3 ATTTCTCCAGCAGT---AATTAATGGCGAGAACCAAGCATTTCGTTACCAGGAAAGGATC 59
|||||| ||||||| ||| ||||||||||||||||||| |||||||||| | | |
Sbjct 102 ATTTCT-CAGCAGTAAAAATCAATGGCGAGAACCAAGCATCGCGTTACCAGGTCACAACC 160
Query 60 TGGGAATCGAACTGATGCCAATGCTTCTTCATCTTCTCAAGCGGCAGGTCCGACGAAGAC 119
| |||||| |||||||||| | | ||||||||||||| ||||||||||| || | |||
Sbjct 161 TCGGAATCAAACTGATGCCGCCGGTGCTTCATCTTCTCAGGCGGCAGGTCCAACTACGAC 220
Query 120 ACCGACAACAAGAGGCACTGAAGGTGGAGATAATACT---C-AAC-AA----ACAACTTC 170
||||||| |||||| ||||||||||||||||||| | ||| || ||||||||
Sbjct 221 CCCGACAAGGAGAGGCGGTGAAGGTGGAGATAATACTCAACAAACAAATCCTACAACTTC 280
Query 171 ACCAGCTACTGGTGGAAGGAGAGGGCCTAGGAGAGCCAGACAGGCTATGCCACGAGGTTC 230
||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||| ||
Sbjct 281 ACCAGCTACTGGTACAAGGAGAGGGGCTAAGAGATCCAGACAGGCTATGCCACGAGGCTC 340
Query 231 ACAGAAGAAGCCTTATAGATACAAGCCAGGAACAGTTGCTCTGAGAGAGATTCGACATTT 290
|||||||||| ||||| |||||| ||||||||| |||||||| | ||||||||| |||||
Sbjct 341 ACAGAAGAAGTCTTATCGATACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTT 400
Query 291 CCAGAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTAT 350
||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||
Sbjct 401 CCAGAAGCAGACAAACCTTCTTATTCCGGCTGCCAGTTTCATAAGAGAAGTGAGAAGTAT 460
Query 351 AACTCATGCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCT 410
||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 461 AACCCATATGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCT 520
Query 411 TCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCCGATTCAATGCTCTGTGCTAT 470
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 521 TCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTAT 580
Query 471 CCATGCAAGACGTGTTACGCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGG 530
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 581 CCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGG 640
Query 531 AAAAGGCAGACCATGGTGATAGAAA-CTCACTCCCTATTC 569
||||||||||||||||||||||||| ||||||| ||||||
Sbjct 641 AAAAGGCAGACCATGGTGATAGAAAACTCACTCACTATTC 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27327375968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5