BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923630
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51450.1 | Symbols: TRO | TRAUCO | chr1:19074371-19076520 FO... 2176 0.0
> AT1G51450.1 | Symbols: TRO | TRAUCO | chr1:19074371-19076520
FORWARD LENGTH=1858
Length=1858
Score = 2176 bits (1178), Expect = 0.0
Identities = 1450/1576 (92%), Gaps = 39/1576 (2%)
Strand=Plus/Plus
Query 6 AAAAACTT-TCTTCCAATGGAGTCTCTTCAATCAAATTCCAAAATCGAAGAAGCTGAACA 64
|||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 13 AAAAACTTCTGTTTCAATGGAGTCTCTTCAATCAAATTCCAAAATTGAAGAAGCTGAACA 72
Query 65 AAAT-CCAAAAGGCGAAAAAGTTGAAGTTTCAATTTCTCTTCCCGACGAATCTACTGGA- 122
|||| |||||| ||| ||| |||| ||| | || |||||||| ||| |||| |||
Sbjct 73 AAATCCCAAAA-TTGAAGAAGCACAAGTCTCAGTATCGCTTCCCGAAGAACCTACCGGAG 131
Query 123 ----AC--CACT-----CT--T----GATTCAGCGCCACCGGAATCATCCGCTGCAGTTG 165
| | || || | ||||||||||| ||||||||||||| ||| || |
Sbjct 132 TTCTTCTTCCCTCCGAACTGGTGGACGATTCAGCGCCGCCGGAATCATCCGATGCTGTCG 191
Query 166 AAGAATCAATCGAAACTGATTTAGAAGCAGAAGTTTCAATTTCTCTTAC-CGAA-GAAC- 222
|||||||||||||||||| || |||||||||||| |||||||||||| | |||| ||||
Sbjct 192 AAGAATCAATCGAAACTGCTTCAGAAGCAGAAGTATCAATTTCTCTT-CTCGAAGGAACT 250
Query 223 -CCACCGGAATCGCTCTTCTTCCCTCTGAAGTGGATGATACAGTGCCACTGGAACCATCC 281
||||||||| |||||||||||| ||||||| | ||||| || |||| ||||| | |||
Sbjct 251 ACCACCGGAACCGCTCTTCTTCCTTCTGAAGAGAATGATTTAGCGCCATTGGAATCGTCC 310
Query 282 GGTGTAATCGAAGAACCAATCGATACTGATTTGGAGAAAGTAGATGTAGTAGCTATGGAT 341
||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 311 GGTATAATTGAAGAACCAATCGATACTGATTTAGAGAAATTAGATGTAGTAGCTATGGAT 370
Query 342 GTTGATCGACCCGGATCCGATTTGAAAATTGAATCCGATTCATTCTCTGAAGAAGCTCCA 401
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTTGATCAACCCGGATCCGATTTGAAAATTGAATCCGATTCATTCTCTGAAGAAGCTCCG 430
Query 402 ACTGCTTCTTCCTCCGATAACCCTAAATCTCCGAAACTGGATTCTGTGGCTAATCAGAAC 461
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ACTACTTCTTCCTCCGATAACCCTAAATCTCCGAAACTGGATTCTGTGGCTAATCAGAAC 490
Query 462 GTTAGTGCAATGGAAGAAGACGAAGGAGATGAAGAAG-AAGATGATCCACCGCATAAGAA 520
| ||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 491 GGTAGCGCAATGGAAGAAGACGAAGGAGATGAAG-AGCAAGATGATCCACCGCATAAGAA 549
Query 521 GCAGAAGCAGTTAGATTCTATTACTTCAGTTGCTGTTAAGGAAGAGGAAGAGCCAGAGCA 580
|| |||||| |||||| | |||||||||| ||||||||||||||||| |||||||||||
Sbjct 550 GCTTAAGCAGCTAGATTGTCTTACTTCAGTCGCTGTTAAGGAAGAGGAGGAGCCAGAGCA 609
Query 581 AGTGCAGCCATCGGAAGCAATGGTTGTGGAGGAAGCAGCGGCGACTTTGGTTGCGAGTGC 640
||||| ||||||||||| ||||||||||||| | |||||||||| |||||||||||||
Sbjct 610 AGTGCTTCCATCGGAAGCTATGGTTGTGGAGG-A--AGCGGCGACTCTGGTTGCGAGTGC 666
Query 641 GGCTAAGAAATCGAAATCGAAGAAGAAGAACAATAATGTATGGGTGACGAAGAGTACACG 700
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 667 GGCTAAGAAATCTAAATCGAAGAAGAAGAACAATAATGTATGGGTGACTAAGAGCACACG 726
Query 701 CAAGGGAAAGAAGAAGAGTAAAGCCAACACACCTAATTCAGCAGCTGTTGAAGATAAGGT 760
||||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||
Sbjct 727 TAAGGGAAAGAAGAAGAGTAAAGCCAACACGCCGAATCCAGCAGCTGTAGAAGATAAGGT 786
Query 761 ATTGATAACTCCGGTTCCTAGAGTTCCCGATAAGGGAGACGATACGCCTGACTTGGAAAT 820
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 787 ATTGATAACTCCGGTGCCTAGATTTCCCGATAAGGGAGACGATACACCTGACTTGGAAAT 846
Query 821 TTGCCTTTCTAAAGTTTACAAAGCTGAGAAAGTTGAGGTAAGTGAAGATAGACTTACTGC 880
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 847 TTGCCTTTCTAAAGTATACAAAGCTGAGAAAGTTGAGATAAGTGAAGATAGACTTACTGC 906
Query 881 GGGAAGTAGTAAAGGGTATAGGATGGTGAGAGCTACAAGAGGAGTTGTTGAAGGAGCTTG 940
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AGGAAGTAGTAAAGGGTATAGGATGGTGAGAGCTACAAGAGGAGTTGTTGAAGGAGCTTG 966
Query 941 GTACTTTGAGATTAAAGTTTTGAATTTGGGTGAGTCTGGTCATACACGACTCGGGTGGTC 1000
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 967 GTACTTTGAGATTAAAGTTTTGAGTTTAGGTGAGACTGGTCATACACGACTCGGGTGGTC 1026
Query 1001 AACTGATAAAGGGGATTTGCAGGCTCCGGTTGGGTACGATGGGAATAGTTTTGG-TTTCA 1059
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |
Sbjct 1027 GACTGATAAAGGGGATTTGCAGGCTCCAGTTGGGTATGATGGGAATAGTTTTGGGTTT-A 1085
Query 1060 GGGATATTGATGGGTGTAAGATACATAAGGCTTTAAGGGAGA-AGTATGCTGAGGAAGGT 1118
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1086 GGGATATTGATGGGTGTAAGATACATAAGGCTTTAAGGGAGACA-TATGCTGAGGAAGGG 1144
Query 1119 TACAAGGAAGGTGATGTTATTGGATTCTACATAAATCTTCCTGATGGCGAATCTTTTGCT 1178
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1145 TACAAGGAAGGTGATGTTATTGGATTCTACATAAATCTTCCTGATGGTGAATCTTTTGCT 1204
Query 1179 CCAAAGCCTCCTCATTATGTGTTTTATAAAGGGCAGAGATATATTTGTGCTCCTGACGCT 1238
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1205 CCAAAGCCTCCTCATTATGTGTTTTATAAAGGGCAGAGATATATTTGTGCACCTGATGCT 1264
Query 1239 AAAGAGGAGCCTCCTAAAGTTGTACCAGGCAGTGAAATATCGTTCTTCAAAAATGGTGTA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 AAAGAGGAGCCTCCTAAAGTTGTACCAGGCAGTGAAATATCGTTCTTCAAAAATGGTGTA 1324
Query 1299 TGTCAGGGAGTTGCCTTCACAGATATTTTTGGCGGTCGTTACTACCCTGCTGCTTCGATG 1358
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1325 TGTCAGGGAGCGGCCTTCACAGATATTGTTGGCGGTCGTTACTACCCTGCTGCTTCGATG 1384
Query 1359 TACACTCT-CCCTGACCAGTCAAATTGTCTTGTGAAGTTCAATTTTGGCCCT-GATTTTG 1416
|||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1385 TACACTCTTCCC-GACCAGTCAAATTGTCTTGTGAAGTTCAATTTTGGCCCCAG-TTTTG 1442
Query 1417 AATTTTTCCCTGAGGATTTTGGTGGGCGTGCTACCCCGAGGCCGATGTTGGAGGTTCCAT 1476
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1443 AGTTTTTCCCTGAGGATTTTGGTGGGCGTGCTACCCCGAGGCCGATGTGGGAGGTTCCAT 1502
Query 1477 ATCATGGATTTAATGGTAGACTTGAAAATAATGGTTCTGATGATATGAAGAGTTAGGCAG 1536
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1503 ATCATGGATTTAATGGTAGACTTGAAACTAATGGTTCTGAGGATATGAAGAGTTAGGCAG 1562
Query 1537 AACCAGCAGGCGTATT 1552
||||||||||||||||
Sbjct 1563 AACCAGCAGGCGTATT 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5