BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923630 Length=1552 Score E Sequences producing significant alignments: (Bits) Value AT1G51450.1 | Symbols: TRO | TRAUCO | chr1:19074371-19076520 FO... 2176 0.0 > AT1G51450.1 | Symbols: TRO | TRAUCO | chr1:19074371-19076520 FORWARD LENGTH=1858 Length=1858 Score = 2176 bits (1178), Expect = 0.0 Identities = 1450/1576 (92%), Gaps = 39/1576 (2%) Strand=Plus/Plus Query 6 AAAAACTT-TCTTCCAATGGAGTCTCTTCAATCAAATTCCAAAATCGAAGAAGCTGAACA 64 |||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 13 AAAAACTTCTGTTTCAATGGAGTCTCTTCAATCAAATTCCAAAATTGAAGAAGCTGAACA 72 Query 65 AAAT-CCAAAAGGCGAAAAAGTTGAAGTTTCAATTTCTCTTCCCGACGAATCTACTGGA- 122 |||| |||||| ||| ||| |||| ||| | || |||||||| ||| |||| ||| Sbjct 73 AAATCCCAAAA-TTGAAGAAGCACAAGTCTCAGTATCGCTTCCCGAAGAACCTACCGGAG 131 Query 123 ----AC--CACT-----CT--T----GATTCAGCGCCACCGGAATCATCCGCTGCAGTTG 165 | | || || | ||||||||||| ||||||||||||| ||| || | Sbjct 132 TTCTTCTTCCCTCCGAACTGGTGGACGATTCAGCGCCGCCGGAATCATCCGATGCTGTCG 191 Query 166 AAGAATCAATCGAAACTGATTTAGAAGCAGAAGTTTCAATTTCTCTTAC-CGAA-GAAC- 222 |||||||||||||||||| || |||||||||||| |||||||||||| | |||| |||| Sbjct 192 AAGAATCAATCGAAACTGCTTCAGAAGCAGAAGTATCAATTTCTCTT-CTCGAAGGAACT 250 Query 223 -CCACCGGAATCGCTCTTCTTCCCTCTGAAGTGGATGATACAGTGCCACTGGAACCATCC 281 ||||||||| |||||||||||| ||||||| | ||||| || |||| ||||| | ||| Sbjct 251 ACCACCGGAACCGCTCTTCTTCCTTCTGAAGAGAATGATTTAGCGCCATTGGAATCGTCC 310 Query 282 GGTGTAATCGAAGAACCAATCGATACTGATTTGGAGAAAGTAGATGTAGTAGCTATGGAT 341 ||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 311 GGTATAATTGAAGAACCAATCGATACTGATTTAGAGAAATTAGATGTAGTAGCTATGGAT 370 Query 342 GTTGATCGACCCGGATCCGATTTGAAAATTGAATCCGATTCATTCTCTGAAGAAGCTCCA 401 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 GTTGATCAACCCGGATCCGATTTGAAAATTGAATCCGATTCATTCTCTGAAGAAGCTCCG 430 Query 402 ACTGCTTCTTCCTCCGATAACCCTAAATCTCCGAAACTGGATTCTGTGGCTAATCAGAAC 461 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 ACTACTTCTTCCTCCGATAACCCTAAATCTCCGAAACTGGATTCTGTGGCTAATCAGAAC 490 Query 462 GTTAGTGCAATGGAAGAAGACGAAGGAGATGAAGAAG-AAGATGATCCACCGCATAAGAA 520 | ||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 491 GGTAGCGCAATGGAAGAAGACGAAGGAGATGAAG-AGCAAGATGATCCACCGCATAAGAA 549 Query 521 GCAGAAGCAGTTAGATTCTATTACTTCAGTTGCTGTTAAGGAAGAGGAAGAGCCAGAGCA 580 || |||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||| Sbjct 550 GCTTAAGCAGCTAGATTGTCTTACTTCAGTCGCTGTTAAGGAAGAGGAGGAGCCAGAGCA 609 Query 581 AGTGCAGCCATCGGAAGCAATGGTTGTGGAGGAAGCAGCGGCGACTTTGGTTGCGAGTGC 640 ||||| ||||||||||| ||||||||||||| | |||||||||| ||||||||||||| Sbjct 610 AGTGCTTCCATCGGAAGCTATGGTTGTGGAGG-A--AGCGGCGACTCTGGTTGCGAGTGC 666 Query 641 GGCTAAGAAATCGAAATCGAAGAAGAAGAACAATAATGTATGGGTGACGAAGAGTACACG 700 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 667 GGCTAAGAAATCTAAATCGAAGAAGAAGAACAATAATGTATGGGTGACTAAGAGCACACG 726 Query 701 CAAGGGAAAGAAGAAGAGTAAAGCCAACACACCTAATTCAGCAGCTGTTGAAGATAAGGT 760 ||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||| Sbjct 727 TAAGGGAAAGAAGAAGAGTAAAGCCAACACGCCGAATCCAGCAGCTGTAGAAGATAAGGT 786 Query 761 ATTGATAACTCCGGTTCCTAGAGTTCCCGATAAGGGAGACGATACGCCTGACTTGGAAAT 820 ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| Sbjct 787 ATTGATAACTCCGGTGCCTAGATTTCCCGATAAGGGAGACGATACACCTGACTTGGAAAT 846 Query 821 TTGCCTTTCTAAAGTTTACAAAGCTGAGAAAGTTGAGGTAAGTGAAGATAGACTTACTGC 880 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 847 TTGCCTTTCTAAAGTATACAAAGCTGAGAAAGTTGAGATAAGTGAAGATAGACTTACTGC 906 Query 881 GGGAAGTAGTAAAGGGTATAGGATGGTGAGAGCTACAAGAGGAGTTGTTGAAGGAGCTTG 940 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 AGGAAGTAGTAAAGGGTATAGGATGGTGAGAGCTACAAGAGGAGTTGTTGAAGGAGCTTG 966 Query 941 GTACTTTGAGATTAAAGTTTTGAATTTGGGTGAGTCTGGTCATACACGACTCGGGTGGTC 1000 ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| Sbjct 967 GTACTTTGAGATTAAAGTTTTGAGTTTAGGTGAGACTGGTCATACACGACTCGGGTGGTC 1026 Query 1001 AACTGATAAAGGGGATTTGCAGGCTCCGGTTGGGTACGATGGGAATAGTTTTGG-TTTCA 1059 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| | Sbjct 1027 GACTGATAAAGGGGATTTGCAGGCTCCAGTTGGGTATGATGGGAATAGTTTTGGGTTT-A 1085 Query 1060 GGGATATTGATGGGTGTAAGATACATAAGGCTTTAAGGGAGA-AGTATGCTGAGGAAGGT 1118 |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1086 GGGATATTGATGGGTGTAAGATACATAAGGCTTTAAGGGAGACA-TATGCTGAGGAAGGG 1144 Query 1119 TACAAGGAAGGTGATGTTATTGGATTCTACATAAATCTTCCTGATGGCGAATCTTTTGCT 1178 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1145 TACAAGGAAGGTGATGTTATTGGATTCTACATAAATCTTCCTGATGGTGAATCTTTTGCT 1204 Query 1179 CCAAAGCCTCCTCATTATGTGTTTTATAAAGGGCAGAGATATATTTGTGCTCCTGACGCT 1238 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1205 CCAAAGCCTCCTCATTATGTGTTTTATAAAGGGCAGAGATATATTTGTGCACCTGATGCT 1264 Query 1239 AAAGAGGAGCCTCCTAAAGTTGTACCAGGCAGTGAAATATCGTTCTTCAAAAATGGTGTA 1298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1265 AAAGAGGAGCCTCCTAAAGTTGTACCAGGCAGTGAAATATCGTTCTTCAAAAATGGTGTA 1324 Query 1299 TGTCAGGGAGTTGCCTTCACAGATATTTTTGGCGGTCGTTACTACCCTGCTGCTTCGATG 1358 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1325 TGTCAGGGAGCGGCCTTCACAGATATTGTTGGCGGTCGTTACTACCCTGCTGCTTCGATG 1384 Query 1359 TACACTCT-CCCTGACCAGTCAAATTGTCTTGTGAAGTTCAATTTTGGCCCT-GATTTTG 1416 |||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1385 TACACTCTTCCC-GACCAGTCAAATTGTCTTGTGAAGTTCAATTTTGGCCCCAG-TTTTG 1442 Query 1417 AATTTTTCCCTGAGGATTTTGGTGGGCGTGCTACCCCGAGGCCGATGTTGGAGGTTCCAT 1476 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1443 AGTTTTTCCCTGAGGATTTTGGTGGGCGTGCTACCCCGAGGCCGATGTGGGAGGTTCCAT 1502 Query 1477 ATCATGGATTTAATGGTAGACTTGAAAATAATGGTTCTGATGATATGAAGAGTTAGGCAG 1536 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1503 ATCATGGATTTAATGGTAGACTTGAAACTAATGGTTCTGAGGATATGAAGAGTTAGGCAG 1562 Query 1537 AACCAGCAGGCGTATT 1552 |||||||||||||||| Sbjct 1563 AACCAGCAGGCGTATT 1578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76606031670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5