BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923636
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs) f... 979 0.0
> AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr1:19102799-19104850 REVERSE LENGTH=979
Length=979
Score = 979 bits (530), Expect = 0.0
Identities = 609/647 (94%), Gaps = 5/647 (1%)
Strand=Plus/Plus
Query 6 ACGGCGGCGGAAGTTATGGCGAACATAGAATCAGAAGCAGTCGATTTCGAGCCGGAGGAG 65
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 83 ACGGCGGCGGAAGTCATGGCGAACATAGAATCAGAAGCAGTCGATTTCGAGCCAGAGGAG 142
Query 66 GATGACCTTATGGACGAAGATGGTACAGCTATTGACGGGGCTGATGTTTCTCCACGCGCA 125
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 143 GATGACCTTATGGACGAAGAAGGTACAGCTATTGACGGAGCTGATGTTTCTCCACGCGCG 202
Query 126 GGACATCCGAGGCTTAAGTCGGCTATTGCCGGAGCAAATGGTGAATCAGCAAAGAAGACC 185
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 203 GGACATCCGAGGCTTAAGTCGGCTATTGCCGGAGCTAATGGCGAATCAGCAAAGAAGACC 262
Query 186 AAAGGCCGTGGGTTTCGCGAGGAGAAAGATTCTGATCGTCAGCGTCGTCTTTCTTCGCGC 245
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 263 AAAGGCCGTGGGTTTCGCGAGGAGAAAGATTCCGATCGTCAGCGTCGTCTTTCCTCACGC 322
Query 246 GATTTCGAATCACTCGGTTCCGATGGCGGTCGTGGTCCACAGAGATCCATTGAAGGATGG 305
|||||||||||||| ||||| |||||| ||| |||||| ||||||||| |||||||||||
Sbjct 323 GATTTCGAATCACTTGGTTCAGATGGCCGTCCTGGTCCGCAGAGATCCGTTGAAGGATGG 382
Query 306 ATTATCTTGGTCTCTGGAGTTCATGAGGAGGCGCAGGAGGATGATTTAACCAATGCTTTT 365
|||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||
Sbjct 383 ATTATCTTGGTCTCTGGAGTTCATGAGGAGACACAGGAGGAGGATATAACCAATGCTTTT 442
Query 366 GGTGATTTTGGGGAGATAAAGAATCTACATCTCAATCTCGATCGCCGTACTGGTTTTGTC 425
||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 443 GGTGATTTTGGGGAGATTAAGAATCTAAATCTCAATCTCGATCGCCGTAGTGGTTATGTC 502
Query 426 AAGGGCTATGCTTTGATAGAGTATGAGAAGTATGAAGAAGCACAGAAG-GCTATTTCAGC 484
||||| |||||||||||||| ||||||||| | |||||||||||| || |||||||||||
Sbjct 503 AAGGGATATGCTTTGATAGAATATGAGAAGAAGGAAGAAGCACAG-AGCGCTATTTCAGC 561
Query 485 AATGAATGGTGCTGAGCTTCTAACACAGAATGTTAGCGTTGACTGGGCCTTCAGCAGAGG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 562 AATGAATGGTGCTGAGCTTCTAACACAGAATGTTAGCGTTGACTGGGCCTTCAGCAGCGG 621
Query 545 TCCCAGTGCTG---AATCTTACAGGAGAAAGAACTCGAGGTCTGGGAGGTCGCAACGTTC 601
|||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 622 TCCCAGTGGTGGTGAATCTTACAGGAGAAAGAACTCGAGGTATGGGAGGTCGCAACGTTC 681
Query 602 AAGAAGCCCGAGGAGACGTTACTGATTGTATGATTTGGTGGAGAGTT 648
|||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 682 AAGAAGTCCGAGAAGACGTTACTGATTGTATGATTTGGTGGAGAGTT 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5