BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923642
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51560.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase fam... 1921 0.0
AT3G21140.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase fam... 946 0.0
> AT1G51560.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase family
protein | chr1:19119635-19121938 REVERSE LENGTH=1523
Length=1523
Score = 1921 bits (1040), Expect = 0.0
Identities = 1162/1221 (95%), Gaps = 7/1221 (1%)
Strand=Plus/Plus
Query 1 AGCGATCTTGTTTCTCTACCATGGAAGCTGCTATCTTTACTTCAC-TAAACGTTTCCAAT 59
||||||||||||||||||||||||| ||||||||||||||||| | || |||||| ||||
Sbjct 60 AGCGATCTTGTTTCTCTACCATGGATGCTGCTATCTTTACTTC-CGTATACGTTTGCAAT 118
Query 60 TTACCAAAGAC---GAAGGCTTTCTTCAACACGAATTCACCTGCTCTATCTTCGTCTTCT 116
|||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 119 ATACCAAAGACGAAGAAGGCTTTCTTCAACCCGAATCCGCCTGCTCTATCTTCGTCTTCT 178
Query 117 TGTTGGCTCTGCAATTCGTC-AGCCAAGCGAATCGTTAAACTGAGGCTCAGGGAGGGATC 175
|||||||||||||||||| | |||||||| |||| | |||||||| ||||||| || ||
Sbjct 179 TGTTGGCTCTGCAATTCG-CAAGCCAAGCAAATCATAAAACTGAGAATCAGGGAAGGCTC 237
Query 176 GAATCAAGGGCTTCTTCGTGTACATGCTCTGTTTCACAACGAGGAGGCATCAAGTGAAAG 235
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 GAATCAGGGGCTTCTTCGTGTACATGCTCTGTTTAACAACGAGGAGGCATCAAGTGAAAG 297
Query 236 CGAAGATAAGAATGGATTTGGTTTGTTACCTGCGGATATTTTCTCTTTGTCTCAGGAGAA 295
|||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 298 TGAAGATAAGAATGGGTTTGGTTTGCTACCTGCGGATATTTTCTCTTTGCCTCAGGAGAA 357
Query 296 GTTTGGAAGTAATGTAAGTGGTGAAAAGGATAGTGATAATATAATCGATGTGGAGACTTC 355
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 358 GTTTGGAAGTAATGTAAGTGGTGAAAAGGATAGTGAAAATATAATTGATGTAGAGACATC 417
Query 356 TCTTGTGGTTCCTCATGGTGGAGGAACTCGAGCTGGGCTCTTTAGAACTCCGATTTCTGG 415
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTTGCGGTTCCTCATGGTGGAGGAACTCGAGCTGGGCTCTTTAGAACTCCGATTTCTGG 477
Query 416 TGGTGTTCAAAGCGCAACCTCGGCTCATGGTTTACCTCGACCAGCTTTAGCTGTTAGGAA 475
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 478 TGGTGTTCAAAGCGCAACCTCTGCTCACGGTTTACCTCGACCTGCTTTAGCTGTTAGGAA 537
Query 476 CTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACAGTGATGTCTAAAATGCACCATCG 535
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 CTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACTGTGATGTCTAAAATGCACCATCG 597
Query 536 TAGAGAAGGCTATCCGTTTGGCTCTTTGGTAGATTTTGCACCTGATCCGATGGGGCACCC 595
||||||||| || || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 598 TAGAGAAGGGTACCCATTTGGATCGTTGGTAGATTTTGCACCTGATCCGATGGGGCACCC 657
Query 596 AATATTTTCATTTTCACCGTTGGCTATTCACACGCGGAATATCTTAGCTGAACCTAGATG 655
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 AATATTTTCATTTTCACCGTTGGCTATTCACACTCGGAATATCTTAGCTGAACCTAGATG 717
Query 656 CACCCTAGTTGTTCAGATACCCGGATGGAGTTGCTTATCGAATGCAAGAGTAACATTATT 715
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 718 CACCCTCGTTGTTCAGATACCAGGATGGAGTTGCTTATCGAATGCAAGAGTAACATTATT 777
Query 716 CGGCGATGTCTACCCATTGCCAGAAGATCAGCAAGAATGGGCCCATAAGCAGTATATGTT 775
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 778 CGGCGATGTCTACCCATTGCCAGAAGAGCAGCAAGAATGGGCCCATAAGCAGTATATGTT 837
Query 776 GAAGCATCACCAAGGACCTTCCCAACAATGGGGAAACTTTCACTATTTTAGAATGCAGAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAGCATCACCAAGGACCTTCCCAACAATGGGGAAACTTTCACTATTTTAGAATGCAGAA 897
Query 836 CATATGTGATATATATTTCATTGGAGGTTTTGGCACTGTCGCGTGGATCAACGTCAATGA 895
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 CATAAGTGATATATATTTCATTGGAGGTTTTGGCACTGTCGCGTGGATCAATGTCAATGA 957
Query 896 GTACGAGGCTCTTCAGCCAGATAAGATAGCTGTTGATGGAGGTGAGCAAAATCTAAAGGA 955
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 GTACGAGACTCTTCAGCCAGATAAGATAGCTGTTGATGGAGGTGAGCAAAATCTGAAGGA 1017
Query 956 ACTCAATGCCATCTTCTCAAAGCCACTTAGAGAGTTATTGTCTAGTGAAGCCGAGGTCGA 1015
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1018 ACTTAATGCAATCTTCTCAAAGCCACTTAGAGAGTTATTGTCTAGTGAAGCCGAGCTAGA 1077
Query 1016 CGATGCTGCTATCATTTCTATAGATAGCAAAGGGGTCGATATAAGAGTTCGTCAAGGTGC 1075
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 1078 CGATGCTGCTATCATTTCTATAGATAGCAAAGGGATTGATATAAGGGTTCGTCAAGGTGC 1137
Query 1076 TCAGTTTAACATACAAAGGCTAGCCTTTGAGGAAAGTCATGGTGTTGATACTTTAGAAGA 1135
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1138 TCAGTTTAAGATACAAAGGCTAGCCTTTGAGGAAAGTCATGGTGTTGAGACTTTAGAAGA 1197
Query 1136 AGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGCAAGTTGCACAATTTGCAGAAATG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGCAAGTTGCACAATTTGCAGAAATG 1257
Query 1196 ACCCAAAGGTTTCATGGATTT 1216
||||||| |||||||||||||
Sbjct 1258 ACCCAAACGTTTCATGGATTT 1278
> AT3G21140.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase family
protein | chr3:7409442-7412225 REVERSE LENGTH=1557
Length=1557
Score = 946 bits (512), Expect = 0.0
Identities = 914/1105 (83%), Gaps = 40/1105 (4%)
Strand=Plus/Plus
Query 110 GTCTTCTTGTTGGCTCTGCAATTCGTC-AGCC-AAGCG-AA-TCGTTAAACTGAGGCTCA 165
|||||| |||||| | || |||||| | | || || || || || || ||||| ||||
Sbjct 223 GTCTTCGTGTTGGTTTTGTAATTCG-CTACCCAAAACGCAATTCCCGAAGCTGAGACTCA 281
Query 166 GGGAGGGATCGAA-TCAAGGGCTTCTTCGTGTACATGCTCTGTTTCACAACGAGGAGGCA 224
| | ||||| || ||| ||| |||||| |||| ||||| || | ||||| || ||
Sbjct 282 GTAATGGATC-AAGTCACGGG---CTTCGTATACAAGCTCTCTTACGTAACGA-GACGC- 335
Query 225 TCAAGTGAAAGCGAAGATAAGAATGGATTTGGTTTGTTACCTGCGGATATTTTCTCTTTG 284
|||||||| | |||||||| ||||| |||||||| || |||| |||||| ||||||||
Sbjct 336 -CAAGTGAAGGTGAAGATAATAATGGGTTTGGTTTTTTTCCTGGGGATATCTTCTCTTTA 394
Query 285 TCTCAGGAGAAGTTTGGAAGTAAT-GTAAGTGGTGAAAAGGATAGTGATAATATAATCGA 343
|| ||||| ||| | || |||||| | || ||||| ||| | | ||| | |||||||
Sbjct 395 TCACAGGAAAAGCTCGGGAGTAATAGCAA-TGGTG-AAA--CTTCTCATAGTGTAATCGA 450
Query 344 TGTGGAGACTTCTCTTGTGGTTCCTC-A--TGGTGGAGGAACTCGAGCTGGGCTCTTTAG 400
||||||| | ||||||| ||||| | ||||||||||| |||||||||||| |||||
Sbjct 451 TGTGGAGGCATCTCTTGCACATCCTCAAGGTGGTGGAGGAAATCGAGCTGGGCTTTTTAG 510
Query 401 AACTCCGATTTCTGGTGGTGTTCAAAGCGCAACCTCGGCTCATGGTTTACCTCGACCAGC 460
|||||| || |||||||||||||||| || || || ||||||| ||||||||| || ||
Sbjct 511 AACTCCAATATCTGGTGGTGTTCAAAATGCTACATCAGCTCATGCTTTACCTCGGCCTGC 570
Query 461 TTTAGCTGTTA-GGAACTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACAGTGATGT 519
|||||||| || |||||||| |||| ||||| |||||||||||||| |||||||||||||
Sbjct 571 TTTAGCTG-TACGGAACTTGTTGGAACAGGCTAGGTTTGCTCATCTGTGCACAGTGATGT 629
Query 520 CTAAAATGCACCATCGTAGAGAAGGCTATCCGTTTGGCTCTTTGGTAGATTTTGCACCTG 579
| ||||||||||| || || ||||| || || |||||||| |||||||||||||||||||
Sbjct 630 CCAAAATGCACCACCGCAGGGAAGGGTACCCATTTGGCTCATTGGTAGATTTTGCACCTG 689
Query 580 ATCCGATGGGGCACCCAATATTTTCATTTTCACCGTTGGCTATTCACACGCGGAATATCT 639
||| ||||||||| |||||||||| ||||||||| |||| || ||||| || ||| |||
Sbjct 690 ATCGGATGGGGCATCCAATATTTTTGTTTTCACCGCTGGCCATCCACACACGAAATCTCT 749
Query 640 TAG-CTGAACCTAGATGCACCCTAGTTGTTCAGATACCCGGATGGAGTTGCTTATCGAAT 698
| | |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 750 T-GAATGAACCTAGATGCAGCCTCGTTGTTCAGATACCCGGATGGAGTGGCTTATCGAAT 808
Query 699 GCAAGAGTAACATTATTCGGCGATGTCTACCCATTGCCAGAAGATCAGCAAGAATGGGCC 758
|||||||| |||||||| || ||||| ||||||||| |||| ||| | || || ||||||
Sbjct 809 GCAAGAGTGACATTATTTGGTGATGTGTACCCATTGTCAGAGGATGAACAGGAGTGGGCC 868
Query 759 CATAAGCAGTATATGTTG--AAGCATCAC-CAAGGACCTTCCCAACAATGGGGAAACTTT 815
|||||||| |||| ||| ||||| | | || || ||||| | |||||||||||||||
Sbjct 869 CATAAGCA--ATATATTGCAAAGCA-CCCGCACGGGCCTTCAGAGCAATGGGGAAACTTT 925
Query 816 CACTATTTTAGAATGCAGAACATATGTGATATATATTTCATTGGAGGTTTTGGCACTGTC 875
|| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 926 CATTATTTTAGAATGCAGAACATAAGTGATATATATTTCATTGGAGGCTTTGGCACGGTC 985
Query 876 GCGTGGATCAACGTCAATGAGTACG-AGGCTCTT-CAGCCAGATAAGATAGCTGTTGATG 933
|| ||| | | ||||| ||||| | ||| | || || ||||||||||||||||||||||
Sbjct 986 GCTTGGGTTGATGTCAAAGAGTATGAAGG-T-TTACAACCAGATAAGATAGCTGTTGATG 1043
Query 934 GAGGTGAGCAAAATCTAAAGGAACTCAATGCCATCTTCTC-AAAGCCACTTAGAGAGTTA 992
| ||||||| || || |||||||| |||||||||||||| ||| || || |||||| ||
Sbjct 1044 GTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTCTCGAAA-CCGCTGAGAGAGCTA 1102
Query 993 TTGTCTAGTGAAGCCGAGGTCGACGATGCTGCTATCATTTCTATAGATAGCAAAGGGGTC 1052
|||||| |||| | ||||| |||||||||||| ||||||| |||||||||||||| |
Sbjct 1103 CTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTCATTTCAATAGATAGCAAAGGAATA 1162
Query 1053 GATATAAGAGTTCGTCAAGGTGCTCAGTTTAACATACAAAGGCTAGCCTTTGAGGAAAGT 1112
||| || | |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1163 GATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAAAGGCTAGCATTTGAGGAAGGT 1222
Query 1113 CATGGTGTTGATACTTTAGAAGAAGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGC 1172
||||||||||| || |||||||||| || |||||| | ||||||||| | ||||||| |
Sbjct 1223 CATGGTGTTGAGACACTAGAAGAAGCTAAGTCTGCATTATGGAAAGTGTTGGAGAAGGTC 1282
Query 1173 AAGTTGCACAATTTGCAGAAATGAC 1197
||| || | | ||||||||||||||
Sbjct 1283 AAGCTG-A-A-TTTGCAGAAATGAC 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5