BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923649
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51610.1 | Symbols: | Cation efflux family protein | chr1:1... 2167 0.0
> AT1G51610.1 | Symbols: | Cation efflux family protein | chr1:19136251-19139918
FORWARD LENGTH=2045
Length=2045
Score = 2167 bits (1173), Expect = 0.0
Identities = 1340/1417 (95%), Gaps = 25/1417 (2%)
Strand=Plus/Plus
Query 1 CATGCTCTGAAGACTCTGAAATGCAATCAACACATCGGGTTTTGTCTCGCCTCCTTCATT 60
|||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 355 CATGCTCTTAAGACTCTGAAATGCAATCATCGCATCGAATTTTGTCTCGCCTCCTTCATT 414
Query 61 CTCC-AGGAAAAGGTTACATCAGAGCAAGTGTCGGTGGCTCAGTTCACTTTTTGGCGCTA 119
|||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 415 CTCCTA-GAAAAGGTTACATCAGAGCAAGTGTCGGTGGCTCTGTTCACTTTTTGGCGCTA 473
Query 120 TTCGACGAGAATGACAATGGATTTGTAG--A-TACTCATCGGAGTTTTAGTTCTCTTATC 176
||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 474 TTCGACGAGAAAGACAATGGATTTGTAGATACTACTCATCGGAGTTTTAGTTCTCTTATC 533
Query 177 CATTCCAATTCTCACTTAAGAAGGTTTATCTCCACCAATTGTTCAAACAAAGGTCTTGGT 236
| ||||| ||||||| ||||| || |||||||||||||||||| ||| ||||||||||||
Sbjct 534 CGTTCCAGTTCTCACGTAAGAGGGCTTATCTCCACCAATTGTTTAAATAAAGGTCTTGGT 593
Query 237 GTTCGATGTTCTGTTT--C-------GGAAACACCCTTAATTGATACCTACTCCTCTCAC 287
|| ||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 594 GTGCGATGTTCTGTTTCGCTTGATAGGGAAACACCTTTAATTGATACCTACTCCTCTCAC 653
Query 288 CGGAATTTCTTCACTCGAGCGAAACAAGTGAAGAGAATTGAGATTAATGATCAACACAGT 347
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 654 CGGAATTTCTTCACTCGGGCGAAACAAGTGAAGAGAATTGAGATCAATGATCAACACAGT 713
Query 348 CAAAGAGCTGTCACCACTGCACTATGGTGCAACTTCCTCGTATTTTCACTTAAGTTTGGG 407
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 714 CAAAGAGCTGTCACTACTGCACTATGGTGCAACTTCCTCGTGTTTTCACTCAAGTTTGGG 773
Query 408 GTTTGGTGGACAAGTTCTAGCCATGTCATAATGGCTGAAGTAGTTCACTCCGTCGCTGAT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 774 GTTTGGTGGACAAGTTCTAGCCATGTCATAATGGCTGAAGTAGTTCACTCCGTAGCTGAT 833
Query 468 TTTGCTAACCAGGCACTTCTTGCTTATGGGCTTAGTAGCTCAAGGCGTGCACCAGATGCC 527
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 834 TTTGCTAACCAGGCACTTCTTGCTTATGGGCTCAGTAGCTCAAGGCGTGCCCCAGATGCT 893
Query 528 CTTCATCCCTATGGCTACTCAAAAGAAAGATTTGTATGGTCCTTGATATCTGCTGTTGGC 587
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 894 CTTCATCCCTATGGCTACTCAAAAGAAAGATTTGTATGGTCTTTGATATCTGCTGTTGGC 953
Query 588 ATCTTTTGCCTTGGGTCTGGTGCTACCATAGTCAATGGAGTTCAGAACTTGTGGACTTCT 647
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 954 ATCTTTTGCCTTGGGTCTGGTGCTACCATAGTTAATGGAGTACAGAACTTGTGGACTTCT 1013
Query 648 TCGCCACCTCCGAATATGGAA-TATGCTGCTTTGGTAATTGGTGGTTCTTTTATAATTGA 706
||||||||||||||||||||| || |||||| |||||||||||||||||||| |||||||
Sbjct 1014 TCGCCACCTCCGAATATGGAATTA-GCTGCTGTGGTAATTGGTGGTTCTTTTCTAATTGA 1072
Query 707 AGGTGCCTCGCTT-CTCGTTGCGATTCAATCTGTCAAAAAAGGAGCTGCTCAAGAAGGGA 765
||| || || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1073 AGGCGCTTC-CTTACTCGTTGCAATTCAATCTGTCAAAAAAGGAGCTGCTCAAGAAGGCA 1131
Query 766 TGACCATAAGAGATTATATATGGCGTGGTCATGATCCTACTTCTGTTGCTGTTATGACTG 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGACCATAAGAGATTATATATGGCGTGGTCATGATCCTACTTCTGTTGCTGTTATGACTG 1191
Query 826 AGGATGGCGCTGCAGTGGCAGGTTTGGCAATTGCTGCCGCATCTCTTGTTGCTGTTAGGA 885
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1192 AGGATGGCGCTGCAGTGGCAGGTTTGGCAATTGCTGCCGCATCTCTTGTCGCTGTTAGGA 1251
Query 886 TGACAGGAAATCCTATCTATGATCCTATAGGATCAATTGTAGTCGGAAATTTACTTGGAA 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TGACAGGAAATCCTATCTATGATCCTATAGGATCAATTGTAGTCGGAAATTTACTTGGAA 1311
Query 946 TGGTCGCTATATTTCTCATTCAACGAAACCGACATGCCTTGATTGGAAGAGCAATGGATG 1005
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TGGTTGCTATATTTCTAATTCAACGAAACCGACATGCCTTGATTGGAAGAGCAATGGATG 1371
Query 1006 ATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGGAATGACACGGTTGTAGATGCTTTAT 1065
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 1372 ATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGAAATGACTCGGTTGTAGATTCTTTAT 1431
Query 1066 ATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAGATT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 ATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAGATT 1491
Query 1126 TCAACGGGCAGATGGTTGTCCAAAACTATCTGAAGAGAACTGGGCGTGAAGAGTGGGCGA 1185
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1492 TCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTGAAGAGTGGGCAA 1551
Query 1186 AACTGTTTCGGGAGGCCGCAAAGAAAGGGGATGATTCTGCAATGCTCAAGATTATGTCAA 1245
|| ||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1552 AAATGTTTCGCGAGGCTGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAA 1611
Query 1246 ACTACGGTGAGGAAGTTGTCACGGCTTTAGGAAGTGAAGTAGACCGGTTAGAGAAAGAGA 1305
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1612 ACTACGGTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGACCGGTTAGAGAAAGAGA 1671
Query 1306 TTCAAGAGCTTGTCCCAGGAATCCAGCATGTTGACATTGAAGCACACAACCCCACA---- 1361
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 TCCAAGAGCTTGTCCCAGGAATCCAGCATGTTGACATTGAAGCACACAACCCCACACCCA 1731
Query 1362 --GACCCATCTCTATGATCTGAAAAAAGAAACTCGCT 1396
||||||||||| |||||| || |||||||||||||
Sbjct 1732 CAGACCCATCTCTTTGATCT-AATAAAGAAACTCGCT 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68774746650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5