BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923657
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51680.1 | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA li... 2599 0.0
AT3G21240.1 | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 ... 1360 0.0
> AT1G51680.1 | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA
ligase 1 | chr1:19158752-19161552 REVERSE LENGTH=2029
Length=2029
Score = 2599 bits (1407), Expect = 0.0
Identities = 1580/1666 (95%), Gaps = 2/1666 (0%)
Strand=Plus/Plus
Query 39 GTGATGGAGAAACAGAGCAACAACAACAACAGTGACGTCATTTTCCGATCAAAGCTACCG 98
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 GTGATGGAGAAACAGAGCAACAACAACAACAGTGACGTCATTTTCCGATCAAAGTTACCG 178
Query 99 GATATTTACATCCCAAACCACCTCTCTCTCCACGACTACATCTTCCAAAACATCTCCGAA 158
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 GATATTTACATCCCGAACCACCTATCTCTCCACGACTACATCTTCCAAAACATCTCCGAA 238
Query 159 TTCGCCACCAAGCCTTGCCTAATCAACGGACCAACCGGACACGTGTACACTTACTCAGAC 218
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 239 TTCGCCACTAAGCCTTGCCTAATCAACGGACCAACCGGCCACGTGTACACTTACTCCGAC 298
Query 219 GTCCACGTCATCTCCCGCCGAATCGCCGCCGGTTTTCACAAACTCGGCGTTAACCAAAAC 278
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 299 GTCCACGTCATCTCCCGCCAAATCGCCGCCAATTTTCACAAACTCGGCGTTAACCAAAAC 358
Query 279 GACGTCGTCATGCTCCTCCTCCCAAACTGCCCCGAATTCGTCCTCTCTTTCCTCGCCGCT 338
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 GACGTCGTCATGCTCCTCCTCCCAAACTGTCCCGAATTCGTCCTCTCTTTCCTCGCCGCC 418
Query 339 TCTTTCCGCGGCGCAATCGCCACCGCCGCGAATCCATTCTTCACTCCGGCGGAGATCGCT 398
|| ||||||||||||| |||||||||||| || || |||||||||||||||||||| |||
Sbjct 419 TCCTTCCGCGGCGCAACCGCCACCGCCGCAAACCCTTTCTTCACTCCGGCGGAGATAGCT 478
Query 399 AAACAAGCCAAAGCCTCCAACTCCAAACTCATCATCACCGAATCTCGCTACGTCGACAAA 458
||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||
Sbjct 479 AAACAAGCCAAAGCCTCCAACACCAAACTCATAATCACCGAAGCTCGTTACGTCGACAAA 538
Query 459 ATCAAATCC-CTCCAAAAGGACGACGGAGTCGTTATCGTCTGCATCGACGACAACGAATC 517
|||||| || || ||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 539 ATCAAA-CCACTTCAAAACGACGACGGAGTAGTCATCGTCTGCATCGACGACAACGAATC 597
Query 518 CGTCCCTATCCCTGACGGCTGCCTCCGATTTACCGAATTGACTCAGTCAACAACCGAGTC 577
||| || |||||||| ||||||||||| || ||||| ||||||||||| ||||||||| |
Sbjct 598 CGTGCCAATCCCTGAAGGCTGCCTCCGCTTCACCGAGTTGACTCAGTCGACAACCGAGGC 657
Query 578 ATCAGACGTAATCGACTCGGTTGAGATTTCACCGGACGACGTGGTGGCGCTTCCTTACTC 637
|||||| || ||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 658 ATCAGAAGTCATCGACTCGGTGGAGATTTCACCGGACGACGTGGTGGCACTACCTTACTC 717
Query 638 CTCCGGCACGACGGGACTACCCAAAGGAGTGATGCTGACACACAAAGGACTAGTCACGAG 697
||| |||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 718 CTCTGGCACGACGGGATTACCAAAAGGAGTGATGCTGACTCACAAGGGACTAGTCACGAG 777
Query 698 CGTTGCTCAGCAAGTCGACGGCGAGAACCCGAATCTTTATTTCCACAGCGATGACGTCAT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CGTTGCTCAGCAAGTCGACGGCGAGAACCCGAATCTTTATTTCCACAGCGATGACGTCAT 837
Query 758 ACTCTGTGTTTTGCCCATGTTTCATATCTACGCTTTGAACTCGATCATGTTGTGTGGTCT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACTCTGTGTTTTGCCCATGTTTCATATCTACGCTTTGAACTCGATCATGTTGTGTGGTCT 897
Query 818 TCGAGTTGGTGCTGCGATTCTGATAATGCCTAAATTTGAGATTAATCTGCTTTTGGAGCT 877
| |||||||||| ||||||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 898 TAGAGTTGGTGCGGCGATTCTGATAATGCCGAAGTTTGAGATCAATCTGCTATTGGAGCT 957
Query 878 GATTCAGAGGTGTAAAGTGACGGTGGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGC 937
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GATCCAGAGGTGTAAAGTGACGGTGGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGC 1017
Query 938 GAAGTCGCCGGAGACGGAGAAGTATGATTTGAGTTCAATAAGAGTGGTGAAATCAGGTGC 997
|||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1018 GAAGTCTTCGGAGACGGAGAAGTATGATTTGAGCTCGATAAGAGTGGTGAAATCTGGTGC 1077
Query 998 TGCTCCTCTTGGTAAAGAGCTTGAAGATGCCGTTAGTGCCAAGTTTCCTAATGCCAAACT 1057
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 TGCTCCTCTTGGTAAAGAACTTGAAGATGCCGTTAATGCCAAGTTTCCTAATGCCAAACT 1137
Query 1058 CGGTCAGGGATACGGAATGACAGAAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGC 1117
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CGGTCAGGGATACGGAATGACGGAAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGC 1197
Query 1118 AAAAGAGCCGTTCCCGGTGAAATCAGGAGCTTGTGGTACGGTGGTAAGAAACGCCGAGAT 1177
||| || || || ||||| || ||||||||||||||||| || |||||||| || |||||
Sbjct 1198 AAAGGAACCTTTTCCGGTTAAGTCAGGAGCTTGTGGTACTGTTGTAAGAAATGCTGAGAT 1257
Query 1178 GAAAATAGTTGATCCAGACACCGGAGATTCTCTTTCGAGGAATCAGCCCGGTGAGATATG 1237
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1258 GAAAATAGTTGATCCAGACACCGGAGATTCTCTTTCGAGGAATCAACCCGGTGAGATTTG 1317
Query 1238 CATCCGTGGTCACCAAATCATGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGAC 1297
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TATTCGTGGTCACCAGATCATGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGAC 1377
Query 1298 CATTGATAAAGATGGTTGGCTTCACACTGGAGATATTGGATTGATCGATGACGATGACGA 1357
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1378 CATTGATAAAGACGGTTGGCTTCATACTGGAGATATTGGATTGATCGATGACGATGACGA 1437
Query 1358 GCTTTTCATCGTTGATCGATTGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCC 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GCTTTTCATCGTTGATCGATTGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCC 1497
Query 1418 AGCTGAGCTAGAGGCTTTGCTCATCGGTCATCCCGACATTACTGATGTTGCTGTTGTCGC 1477
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1498 GGCTGAGCTAGAGGCTTTGCTCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGC 1557
Query 1478 AATGAAAGAAGAAGCTGCTGGTGAAGTTCCAGTTGCATTTGTGGTGAAATCGAAGGATTC 1537
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1558 AATGAAAGAAGAAGCAGCTGGTGAAGTTCCTGTTGCATTTGTGGTGAAATCGAAGGATTC 1617
Query 1538 AGAGTTATCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAG 1597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GGAGTTATCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAG 1677
Query 1598 AATCAACAAAGTGTTTTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATTTTGAG 1657
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1678 AATCAACAAAGTGTTCTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATATTGAG 1737
Query 1658 GAAAGATCTGAGGGCAAAACTAGCAAATGGGTTGTGATCGATGATT 1703
|||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1738 GAAAGATCTGAGGGCAAAACTAGCAAATGGATTGTGATGGATGATT 1783
> AT3G21240.1 | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase
2 | chr3:7454269-7457379 REVERSE LENGTH=1964
Length=1964
Score = 1360 bits (736), Expect = 0.0
Identities = 1352/1643 (82%), Gaps = 67/1643 (4%)
Strand=Plus/Plus
Query 71 TGACGTCATTTTCCGATCAAAG-CTACCGGATATTTACATCCCAAACCACCTCTCTCTCC 129
|||||||||||||||||| || | || ||||| |||||||| ||||||||| | ||||
Sbjct 122 TGACGTCATTTTCCGATC-GAGATTGCCTGATATATACATCCCTAACCACCTCCCACTCC 180
Query 130 ACGACTACATCTTCCAAAACATCTCCGAATTCGCCACCAAGCCTTGCCTAATCAACGGAC 189
|||||||||||||| |||| ||||| || |||||| | ||||| ||| | |||||||| |
Sbjct 181 ACGACTACATCTTCGAAAATATCTCAGAGTTCGCCGCTAAGCCATGCTTGATCAACGGTC 240
Query 190 CAACCGGAC-ACGTGTACACTTACTCAGACGTCCACGTCATC-TCCCGCCG-AA-TCGCC 245
| ||||| | | || ||||| ||| | || |||||||| | | || || | || |||||
Sbjct 241 CCACCGG-CGAAGTATACACCTACGCCGATGTCCACGT-AACATCTCG--GAAACTCGCC 296
Query 246 GCCGGTTTTCACAAACTCGGCGTTAACCAAAACGACGTCGTCATGCTCCTCCTCCCAAAC 305
|||||| |||| || |||||||| || ||| ||||||| || ||| |||||||||| |||
Sbjct 297 GCCGGTCTTCATAACCTCGGCGTGAAGCAACACGACGTTGTAATGATCCTCCTCCCGAAC 356
Query 306 TGC-CCCGAATTCGTCCTCTCTTTCCTCGCCGCTTCTTTCCGCGGCGCAATCGCCACCGC 364
| | || ||| | |||||| ||||||| ||||| || ||| |||||||||| ||||| |
Sbjct 357 T-CTCCTGAAGTAGTCCTCACTTTCCTTGCCGCCTCCTTCATCGGCGCAATCACCACCTC 415
Query 365 CGCGAATCCATTCTTCACTCCGGCGGAGATCGCTAAACAAGCCAAAGCCTCCAAC-TCCA 423
|||||| || |||||||||||||||||||| |||||||||||||||||||| | | |
Sbjct 416 CGCGAACCCGTTCTTCACTCCGGCGGAGATTTCTAAACAAGCCAAAGCCTCC-GCGGCGA 474
Query 424 AACTCATCATCAC-CGAATCTCGCTACGTCGACAAAATCAA-ATCCCTCCAAAAGGACGA 481
|||||||| |||| | |||| || |||||||| |||||||| | ||||| ||| ||||
Sbjct 475 AACTCATCGTCACTC-AATCCCGTTACGTCGATAAAATCAAGA-ACCTCC-AAA--ACGA 529
Query 482 CGGAGTCGTTATCGTCTGCATCGACGA-CAACGAATCCGTC-CCTATCCCTGACGGCTGC 539
| | | || | | | || |||| | | || ||| |||| | || ||||| || ||||
Sbjct 530 C-G-G-CG-T-T--T-TG-ATCGTC-ACCACCGACTCCGACGCC-ATCCCCGAAAACTGC 578
Query 540 CTCCGATTT-ACCGAATTGACTCAGT-C-AACAA-C-CGAGTCATCAGACGT-AATCGAC 593
||||| ||| |||| || ||||||| | || || | |||| | ||| | ||| ||
Sbjct 579 CTCCG-TTTCTCCGAGTTAACTCAGTCCGAAGAACCACGAG---T-GGAC-TCAAT--AC 630
Query 594 TCGGTTG-AGATTTCACCGGACGACGTGGTGGCGCTTCCTTACTCCTCCGGCACGACGGG 652
||| | ||||||| || || ||||| ||||||||||||| ||| ||||||||||||||
Sbjct 631 -CGG-AGAAGATTTCGCCAGAAGACGTCGTGGCGCTTCCTTTCTCATCCGGCACGACGGG 688
Query 653 ACTACCCAAAGGAGTGATGCTGACACACAAAGGACTAGTCACGAGCGTTGCTCAGCAAGT 712
|| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct 689 TCTCCCCAAAGGAGTGATGCTAACACACAAAGGTCTAGTCACGAGCGTGGCGCAGCAAGT 748
Query 713 CGACGGCGAGAACCCGAATCTTTATTTCCACAGCGATGACGTCATACTCTGTGTTTTGCC 772
|||||||||||| ||||||||||| ||| |||| || ||||| || |||||||| |||||
Sbjct 749 CGACGGCGAGAATCCGAATCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCC 808
Query 773 CATGTTTCATATCTACGCTTTGAACTCGATCATGTTGTGTGGTCTTC-GAGTTGGTGCTG 831
||||| ||||| |||||| | ||||| |||||| | ||| ||| || ||||||||||
Sbjct 809 TATGTTCCATATATACGCTCTCAACTCCATCATGCTCTGTAGTC-TCAGAGTTGGTGCCA 867
Query 832 CGATTC-TGATAATGCCTAAATTTGAGATTAATCTGCTT-TTGGAGCTGATTCAGAGGTG 889
||| || ||||||||||||| || || || | ||| ||| || |||| ||| || |||||
Sbjct 868 CGA-TCTTGATAATGCCTAAGTTCGAAATCACTCT-CTTGTTAGAGCAGATACAAAGGTG 925
Query 890 TAAAGTGACGGTGGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGCGAAGTCGCCGGA 949
|||||| ||||||||| | | || || ||||| || || || || ||||||||||||||
Sbjct 926 TAAAGTCACGGTGGCTATGGTCGTGCCACCGATCGTTTTAGCTATCGCGAAGTCGCCGGA 985
Query 950 GACGGAGAAGTATGATTTGAGTTCAATAAG-AGTGGTGAAATCAGGTGCTGCTCCTCTTG 1008
|||||||||||||||| |||| || | || | |||| || || || || ||||||||||
Sbjct 986 GACGGAGAAGTATGATCTGAGCTCGGTTAGGA-TGGTTAAGTCTGGAGCAGCTCCTCTTG 1044
Query 1009 GTAAAGAGCTTGAAGATGCCGTTAGTGCCAAGTTTCCTAATGCCAAACTCGGTCAGGGAT 1068
|||| |||||||||||||| ||||||| ||||||||||| ||||| || |||||||| |
Sbjct 1045 GTAAGGAGCTTGAAGATGCTATTAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCT 1104
Query 1069 ACGGAATGACAGAAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGCAAAAGAGCCGT 1128
| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1105 ATGGGATGACAGAAGCAGGTCCGGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGT 1164
Query 1129 TCCCGGTGAAATCAGGAGCTTGTGGTACGGTGGTAAGAAACGCCGAGATGAAAATAGTTG 1188
| || ||||| |||||||| |||||||||||||| || |||||||||||||| ||| |||
Sbjct 1165 TTCCAGTGAAGTCAGGAGCATGTGGTACGGTGGTGAGGAACGCCGAGATGAAGATACTTG 1224
Query 1189 ATCCAGACACCGGAGATTCTCTTTCG-AGGAATCAG-CCCGGTGAGATATGCATCCGTGG 1246
|||||||||| ||||||||| || | ||||| || ||||| || ||||||||||||||
Sbjct 1225 ATCCAGACACAGGAGATTCT-TTGCCTAGGAA-CAAACCCGGCGAAATATGCATCCGTGG 1282
Query 1247 TCA-CCAAATCATGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGACCATTGATA 1305
|| ||||||||||||||| || ||||| | || || || ||| ||| || ||||
Sbjct 1283 -CAACCAAATCATGAAAGGCTATCTCAATGACCCCTTGGCCACGGCATCGACGATCGATA 1341
Query 1306 AAGATGGTTGGCTTCACACTGGAGATATTGGATTGATCGATGACGATGACGAGCTTTTCA 1365
||||||||||||||||||||||||| | ||||| |||||||| || |||||||||||||
Sbjct 1342 AAGATGGTTGGCTTCACACTGGAGACGTCGGATTTATCGATGATGACGACGAGCTTTTCA 1401
Query 1366 TCGTTGATCGATTGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCCAGCTGAGC 1425
| || ||| ||||||||||||| |||||||| ||||| ||||| || |||||||||||||
Sbjct 1402 TTGTGGATAGATTGAAAGAACTCATCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGC 1461
Query 1426 TAGAGGCTTTGCTCATCGGTCATCCCGACATTACTGATGTTGCTGTTGTCGCAATGAAAG 1485
||||| || | ||||| |||||||| || || | |||||||||||| ||||| ||||| |
Sbjct 1462 TAGAGTCTCTCCTCATAGGTCATCCAGAAATCAATGATGTTGCTGTCGTCGCCATGAAGG 1521
Query 1486 AAGAAGCTGCTGGTGAAGTTCCAGTTGCATTTGTGGTGAAATCGAAGGATTCAGAGT-TA 1544
|||||| ||||||||| ||||| ||||| |||||||||| |||||| |||||| | | ||
Sbjct 1522 AAGAAGATGCTGGTGAGGTTCCTGTTGCGTTTGTGGTGAGATCGAAAGATTCAAA-TATA 1580
Query 1545 TCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAGAATCAAC 1604
|| |||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1581 TCCGAAGATGAAATCAAGCAATTCGTGTCAAAACAGGTTGTGTTTTATAAGAGAATCAAC 1640
Query 1605 AAAGTGTTTTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATTTTGAGGAAAGAT 1664
|||||||| |||||||| || |||||||||||||||||||||||||| |||||||| |||
Sbjct 1641 AAAGTGTTCTTCACTGACTCTATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAGGAT 1700
Query 1665 CTGAGGGCAAAACTAGCAAATGG 1687
|| || |||| ||||||||||||
Sbjct 1701 CTAAGAGCAAGACTAGCAAATGG 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84738519960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5