BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923661
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51710.1 | Symbols: UBP6, ATUBP6 | ubiquitin-specific protea... 2475 0.0
AT3G21280.1 | Symbols: UBP7 | ubiquitin-specific protease 7 | c... 1476 0.0
> AT1G51710.1 | Symbols: UBP6, ATUBP6 | ubiquitin-specific protease
6 | chr1:19175642-19179967 REVERSE LENGTH=1685
Length=1685
Score = 2475 bits (1340), Expect = 0.0
Identities = 1443/1493 (97%), Gaps = 5/1493 (0%)
Strand=Plus/Plus
Query 1 CTCTCCAGTTCTCACAGCAAAGATGCCCAGAGTAAGCGTGAAGTGGCAAAAGAATGTGTT 60
|||| ||||||||||||| |||||||| | |||||||||||||||||||||||| |||||
Sbjct 53 CTCT-CAGTTCTCACAGCGAAGATGCCTACAGTAAGCGTGAAGTGGCAAAAGAAAGTGTT 111
Query 61 TGATGGTATCGAGATCGACACTAGTCTGCCTCCTTTTGTTTTCAAAGCTCATTTGTATGA 120
|||||||||||||| ||| |||||||||||||| ||||||||| ||||| ||||||||
Sbjct 112 GGATGGTATCGAGATTGACGTTAGTCTGCCTCCTTATGTTTTCAAGGCTCAGTTGTATGA 171
Query 121 TTTGACTGGAGTTCCTCCTGAACGCCAAAAGATCATGGTCAAAGGTGGTCTCTTAAAGGA 180
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTTGACTGGAGTTCCACCAGAACGCCAAAAGATCATGGTCAAAGGTGGTCTCTTAAAGGA 231
Query 181 TGATGGAGATTGGTCTGCTATTGGAT-TGAAAGAAGGTCAAAAATTGATGATGATGGGAA 239
||||||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 232 TGATGGAGATTGGGCTGCTATTGG-TGTGAAAGATGGTCAAAAATTGATGATGATGGGAA 290
Query 240 CTGCTGATGAAATTGTGAAAGCTCCTGAAAAGGCCATTGTTTTTGCGGAGGATTTACCTG 299
|||||||||| || |||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 291 CTGCTGATGAGATAGTGAAAGCTCCTGAGAAGGCCATTGTTTTTGCAGAGGATCTACCTG 350
Query 300 AAGAAGCGCAAGCCACTAATCTGGGTTACAGTGCTGGTCTTGTCAATCTTGGCAACACGT 359
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 351 AAGAAGCGCTAGCCACTAATCTGGGTTACAGTGCTGGCCTTGTCAATCTTGGCAACACGT 410
Query 360 GTTACATGAACTCCACGGTGCAGTGCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GTTACATGAACTCCACGGTGCAGTGCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTAT 470
Query 420 CTAATTACTCACTTGCTGCACGAAGCAATGATGTCGACCAGACTTCTCACATGCTCACAG 479
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 471 CCAATTACTCACTTGCTGCCCGAAGCAATGATGTTGACCAGACTTCTCACATGCTCACAG 530
Query 480 TTGCCACACGTGAGTTATTCGGTGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCTACAC 539
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 531 TTGCCACACGTGAGTTATTTGGTGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCTTCAC 590
Query 540 AGTTCTGGATGGTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTGCAGAATGGAATGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AGTTCTGGATGGTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTGCAGAATGGAATGC 650
Query 600 ACATGCAGCAGGATGCTGAAGAATGTTGGACACAACTGTTATACACTCTTTCTCAGTCCC 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 651 ACATGCAGCAGGATGCTGAAGAATGTTGGACACAACTGTTATACACCCTTTCTCAGTCCC 710
Query 660 TTAAAGCACCAACTTCCAGCGAAGATTCTGATGCTGTGAAAGCTCTGTTTGGTGTCAATC 719
| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 711 TAAAAGCACCAACTTCCAGCGAAGGTGCTGATGCTGTGAAAGCTCTATTTGGTGTCAATC 770
Query 720 TTCGGAGCAGGTTGCATTGTCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTAT 779
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TCCAGAGCAGGTTGCATTGTCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTAT 830
Query 780 ATTCTCTAAAATGTCATATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ATTCTCTAAAATGTCATATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATG 890
Query 840 GACTGAAAGGGGAACTTGAAAAAACATCTCCTGCTCTTGGCCGTACTGCACTTTACGTCA 899
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 891 GACTGAAAGGGGAACTTGAAAAAACATCTCCTGCTCTTGGCCGTACTGCACTCTACGTCA 950
Query 900 AGGAGTCACTTATAGATTCCTTGCCAAGGTACTTGACTGTTCAGTTCGTGCGATTTTTCT 959
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 951 AGGAGTCACTTATAGATTCCTTGCCAAGGTACTTGACTGTTCAGTTCGTGCGGTTTTTCT 1010
Query 960 GGAAAAGGGAGAGTAATCAGAAAGCAAAGATTCTCAGGAAAGTGGATTATCCGCTGGTGT 1019
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1011 GGAAAAGGGAGAGTAATCAGAAAGCAAAGATCCTCAGGAAAGTGGATTACCCGCTGGTGT 1070
Query 1020 TGGATATATTTGACCTTTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TGGATATATTTGACCTTTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGA 1130
Query 1080 AACTTAGAGATGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAA 1139
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AACTTAGAGAGGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAA 1190
Query 1140 AGGACAGTGATGTGAAAATGACTGATGCAGAGGCGTCAGCAAATGGAAGTGGAGAATCAT 1199
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1191 AGGACAGTGATGTGAAAATGACTGATGCAGAGGCGTCTGCAAATGGAAGTGGAGAATCAT 1250
Query 1200 CCACAGTAAACCCACAGGAAGGTGCTACTTCTGAGAAGGAAACTCACATGACTGGAATCT 1259
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1251 CCACAGTAAACCCACAGGAAGGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCT 1310
Query 1260 ATGACTTGGTCGCTGTGCTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTG 1319
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 ATGACTTGGTCGCTGTGTTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTG 1370
Query 1320 CATGGGTCAAGCAAGAGAGTGGCAAATGGATTCAATATGATGATGACAACCCGAGCATGC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CATGGGTCAAGCAAGAGAGTGGCAAATGGATTCAATATGATGATGACAACCCGAGCATGC 1430
Query 1380 AACGCGAGGAAGACATCACAAAGCTATCCGGAGGAGGTGATTGGCATATGGCGTACATCA 1439
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1431 AACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGGTGATTGGCATATGGCGTACATCA 1490
Query 1440 CAATGTACAAAGCCCGCTTCGTCTCCATGTAATCTCTCT-TT-CTTTTGATGA 1490
||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1491 CAATGTACAAAGCCCGCTTCGTCTCCATGTAATCTCTCTCTTTCTTTTGATGA 1543
> AT3G21280.1 | Symbols: UBP7 | ubiquitin-specific protease 7 |
chr3:7477987-7482070 REVERSE LENGTH=1811
Length=1811
Score = 1476 bits (799), Expect = 0.0
Identities = 1250/1462 (85%), Gaps = 53/1462 (4%)
Strand=Plus/Plus
Query 31 AGTAAGCGTGAAGTGGCAAAAGAATGTGTTTGATG-GTATCGAGATCGACACTAGTCTGC 89
||| |||||||||||||||||||| |||||||| | |||||||||| || ||||| | ||
Sbjct 207 AGTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGA-GAGTATCGAGATTGATACTAGCCAGC 265
Query 90 CTCCTTTTGTTTTCAAAGCTCATTTGTATGATTTGACTGGAGTTCCTCCTGAACGCCAAA 149
|||||||||||||||| ||||| ||||||||||||| ||||||||| ||||| || ||||
Sbjct 266 CTCCTTTTGTTTTCAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAA 325
Query 150 AGATCATGGTCAAAGGTGGTCTCTTAAAGGATGATGGAGATTGGTCTGCTATT-GGATTG 208
||||||||||||||||||| || || |||||||||| |||||||||| | || ||| ||
Sbjct 326 AGATCATGGTCAAAGGTGGCCTTTTGAAGGATGATGCAGATTGGTCTAC-GTTGGGACTG 384
Query 209 AAAGAA-GGTCAAAAATTGATGATGATGGGAACTGCTGATGAAATTGTGAAAGCTCCTGA 267
||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 385 AAA-AATGGTCAAAAATTGATGATGATGGGAACTGCAGATGAAATAGTGAAGGCTCCAGA 443
Query 268 AAAGG--CCATTGTTTTTGCGGAGGAT-TTACCTGAAGAAGC-GCAAGCCACTAATCTGG 323
|||| || | |||||| ||||||| || ||||||||| | ||| || |||||||||
Sbjct 444 GAAGGGTCC-T-GTTTTTATGGAGGATCTT-CCTGAAGAA-CAGCAGGCTGCTAATCTGG 499
Query 324 GTTACAGTGCTGGTCTTGTCAATCTTGGCAACACGTGTTACATGAACTCCACGGTGCAGT 383
| ||||||||||| || ||||||||||| ||||| |||||||||||||| ||| ||||||
Sbjct 500 GCTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGT 559
Query 384 GCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTATCTAATTACTCACTTGCTGCACGAA 443
| |||| ||||||||||||||||||||||| |||||| |||||| || | |||| ||||
Sbjct 560 GTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAATTAC-CAAT--CTGCTCGAA 616
Query 444 GCAATGATGTCGACCAGACTTCTCACATGCTCACAGTTGCCACACGTGAGTTATTCGGTG 503
||| ||||| || |||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 617 CCAAGGATGTGGATCAGACTTCTCACATGCTCACTGTTGCAACACGTGAGTTATTTAGTG 676
Query 504 AGCTTGATAGAAGTGTCAATGCTGTTTCGCCTACACAGTTCTGGATGGTATTACGAAAAA 563
||||||||| ||||||||| |||||| |||||| | |||||||||||| |||| |||||
Sbjct 677 AGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGCCGTTCTGGATGGTGTTACAAAAAA 736
Query 564 AGTATCCTCAGTTTAG-TCAGTTGCAGAATGGAA-TGCACATGCAGCAGGATGCTGAAGA 621
| |||||||||||| | ||||||||| || |||| | |||||||| ||||||||||||||
Sbjct 737 AATATCCTCAGTTT-GCTCAGTTGCATAACGGAAAT-CACATGCAACAGGATGCTGAAGA 794
Query 622 ATGTTGGACACAACTGTTATACACTCTTTCTCAGTCCCTTAAAGCA-CCAACTTCC-AGC 679
||||||||||||| |||| ||||||||||| |||||||| ||| | ||| | || ||
Sbjct 795 ATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAA-CTGCCATCG-CCTAGT 852
Query 680 GAAGATTCTGATGCTGTGAAAGCTCTGTTTGGTGTCAATCTTCGGAGCAGGTTGCATTGT 739
|||||| ||||||||||||| ||||| |||||| |||| |||| | ||||||||||||
Sbjct 853 GAAGATCCTGATGCTGTGAAGGCTCTTTTTGGTCTCAACCTTCTAAACAGGTTGCATTGC 912
Query 740 CAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTATATTCTCTAAAATGTCATATA 799
||||||||| |||||||||||||||||||||||||||| | |||||| |||||||| |||
Sbjct 913 CAAGAAAGTAGCGAAGAAAGCTCAGAGACAGAATCTGTCTTTTCTCTGAAATGTCACATA 972
Query 800 TCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGGGAACTTGAA 859
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 973 TCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGAGAACTTGAA 1032
Query 860 AAAACATCTCCTGCTCTTGGCCGTACTGCACTTTACGTCAAGGAGTCACTTATAGATTCC 919
|||||||||||| |||| || ||||| || ||||||| |||||||| |||||||||||
Sbjct 1033 AAAACATCTCCTTCTCTGGGTCGTACAGCGGTTTACGTAAAGGAGTCTCTTATAGATTCA 1092
Query 920 TTGCCAAGGTACTTGACTGTTCAGTTCGTGCGATTTTTCTGGAAAAGGGAGAGTAATCAG 979
|||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||
Sbjct 1093 TTGCCAAGGTACTTGACTGTTCAGTTTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAG 1152
Query 980 AAAGCAAAGATTCTCAGGAAAGTGGATTATCCGCTGGTGTTGGATATATTTGACCTTTGC 1039
|||||||| |||||| ||||||||||||||||| ||| ||||||||||| |||||||||
Sbjct 1153 AAAGCAAAAATTCTCCGGAAAGTGGATTATCCGTTGGAGTTGGATATATATGACCTTTGT 1212
Query 1040 TCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGAAACTTAGAGATGAG-GAAGG 1098
|||||||||||||| |||||||||||||||||||| |||||||| |||||| | |||||
Sbjct 1213 TCTGAGGATCTTCGAAAGAAACTGGAAGCTCCTCGACAGAAACTGAGAGAT-ATTGAAGG 1271
Query 1099 TAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGAC-AGTGATGTGAAAA 1157
| ||||||||||||| ||| | ||||| ||||| ||||||||| | |||||||||||
Sbjct 1272 TCAAAAGCTTGGTCTGCAAGCCAGTGCAAAGAGCAGCTCAAAGGGTGA-TGATGTGAAAA 1330
Query 1158 TGACTGATGCAGAGGCG-TCAGCAAATGGAAGTGGAGAATCATCCACAG-TAAACCCACA 1215
|||||||||| |||| | ||| |||| |||||| |||||||| || | | | || |||
Sbjct 1331 TGACTGATGCTGAGG-GATCATCAAACCAAAGTGGCGAATCATCAACTGGTGA-CCAACA 1388
Query 1216 GGAAGGTGCTACTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCGCTGT 1275
|||||||||| | | | |||||||||| ||||| |||||| |||| | ||
Sbjct 1389 GGAAGGTGCT--T-C-GC--------CTCACATGACCGGAATTTATGACCTGGTATCGGT 1436
Query 1276 GCTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAGCAAGA 1335
| |||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1437 GTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTATGTTGCATGGGTCAAGCAAGA 1496
Query 1336 GAGTGGCAAATGGATTCAATATGATGATGACAACCCGAG-CATGCAACGCG-AGGAAGAC 1393
|||||| || ||| ||||||| || |||| |||| | || | | ||||| | || ||||
Sbjct 1497 GAGTGGTAAGTGGGTTCAATACGACGATGCCAACACTAGTCTT-CAACGGGGAG-AAGAT 1554
Query 1394 ATCAC-AAAGCTATCCGGAGGAGGTGATTGGCATATGGCGTACATCACAATGTACAAAGC 1452
|||| ||| || || ||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 1555 ATCATTAAA-CTCTCTGGAGGAGGTGATTGGCATATGGCATACATCGTAATGTACAAGGC 1613
Query 1453 CCG-CTTCGTCTCCATGTAATC 1473
||| || | |||||||||||||
Sbjct 1614 CCGTCT-CATCTCCATGTAATC 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5