BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923663
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51730.1 | Symbols: | Ubiquitin-conjugating enzyme family p... 1443 0.0
> AT1G51730.1 | Symbols: | Ubiquitin-conjugating enzyme family
protein | chr1:19186492-19188788 REVERSE LENGTH=1229
Length=1229
Score = 1443 bits (781), Expect = 0.0
Identities = 840/869 (97%), Gaps = 1/869 (0%)
Strand=Plus/Plus
Query 1 GCTCTTGGTCACGAGGCGACTCTCACTGTGGAGTTCGATATTCAGGCAATCTC-AAAGCT 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCTCTTGGTCACGAGGCGACTCTCACTGTGGAGTTCGATATTCAGGCAATCTCAAAAGCT 120
Query 60 TCCACGACAAAGGTGTCAAATTTAGTCATCATGACGGAGTATAAGCAGGAACAGGAGATG 119
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 121 TCCACGACAAAGGTGTCAAATTTGGTCATCATGACGGAGTATAAGCAGGAGCAGGAAATG 180
Query 120 GAGATTGAAGCTCTTGAAGCTATACTTATGGATGAGTTTAAAGAAATACATTCTAGTGAA 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GAGATTGAAGCTCTTGAAGCTATACTTATGGATGAGTTTAAAGAAATTCATTCTAGTGAA 240
Query 180 AGTGGGCTTAATACTTCGAATCGATGCTTTCAGATCACAGTGACTCCTCAGGATGATGAA 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AGTGGGCTTAATACTTCGAATCGATGCTTTCAGATTACAGTGACTCCTCAGGATGATGAA 300
Query 240 ATGGAGGACTCAGCAATCCCACCAGTTCAGCTGGCTTTGGTTTTCTCGCACACAGAAAAT 299
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGGAGGAATTAGCAATCCCACCAGTTCAGCTGGCTTTGGTTTTCTCGCACACAGAAAAT 360
Query 300 TACCCGGACGAGGCTCCGCTTTTGGATGTTAAAAGTATTCGAGGAATCCATGTTAGTGAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACCCGGACGAGGCTCCGCTTTTGGATGTTAAAAGTATTCGAGGAATCCATGTTAGTGAC 420
Query 360 CTCACCATCTTGAAAGAGAAGCTTGAACAAGAGGCATCTGAAAATCTTGGTATGGCCATG 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CTCACCATCTTGAAAGAGAAGCTTGAACAAGAGGCATCTGAAAATCTAGGTATGGCCATG 480
Query 420 ATCTACACGCTGGTCTCATCAGCAAAGGACTGGTTGTCTGAACAATATGGGCAAGATGAT 479
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ATCTATACACTGGTCTCATCAGCAAAGGACTGGTTGTCTGAACACTATGGGCAAGATGAT 540
Query 480 GCAGCTGACTTAGCCGAAGAAGAAGCTGCCAAAGAGGATGAGGTAATTGTCCCTCATGGA 539
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAGCTGAATTTGCCGAAGTAGAAGCTGCCAAAGAGGATGAGGTAATTGTCCCTCATGGA 600
Query 540 GAACCTGTTACGCTGGAGACATTTTTGGCATGGAGAGAGAGATTTGAAGCAGAGCTTGCG 599
|||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 601 GAACCTGTTACGCTAGAGACATTTTTGGCGTGGAGAGAGAGATATGAGGCAGAGCTTGCA 660
Query 600 CTTGAGCGAGCCAAGCTGATGCCGGAGTCTGCTCTTACAGCACCTAAGGAGAAGAAGCTT 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTGAGCGAGCCAAGTTGATGCCGGAGTCTGCTCTTACAGCACCTAAGGAGAAGAAGCTT 720
Query 660 ACAGGAAGACAGTGGTTTGAAAGTGGCAGAGGGAGAGGAACGGTGGTCGCTGCTGATGAG 719
||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||
Sbjct 721 ACAGGAAGACAGTGGTTCGAAAGTGGGAGAGGGAGAGGAACGGTGGTCATTGCTGATGAG 780
Query 720 GAAGATGAGGAGGAAGATGAGGAAGACATTGACTTTGAAGACGAAGACTTTGAAGATGAC 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 GAAGATGAGGAGGAAGATGAGGAAGACATCGACTTTGAAGACGAAGACTTTGAAGATGAC 840
Query 780 GAAGAAGACATGCTTGAGCACTATTTGGCGGAGAAATCTGATTCTTCCGCTCCCTCATCA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 841 GAAGAAGACATGCTTGAGCACTATTTGGCGGAGAAATCTGATTCTTCCGCTCCCCCAACA 900
Query 840 AGGACATGAAGCTAAGGGAGAGCCTTATA 868
|||||||||||||||||||||||||||||
Sbjct 901 AGGACATGAAGCTAAGGGAGAGCCTTATA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5