BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923664
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51740.1 | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin ... 1583 0.0
> AT1G51740.1 | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin
of plants 81 | chr1:19188843-19191300 FORWARD LENGTH=1265
Length=1265
Score = 1583 bits (857), Expect = 0.0
Identities = 936/975 (96%), Gaps = 2/975 (0%)
Strand=Plus/Plus
Query 1 GATCTGAATTTTGTGTACAAGATGTCGAGATTCAGAGACAGGACAGAGGATTTCAAGGAT 60
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 200 GATCTGAATTTTGGGTACAAGATGTCGAGATTCAGAGACAGGACGGAGGATTTCAAGGAT 259
Query 61 TCTGTTCGAAAATCGGCTGTTTCGATTGGTTATAATGAGTCTAAAGTGGCATCGACAATG 120
|||||||| || || ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 260 TCTGTTCGGAATTCCGCTGTTTCGATAGGTTATAATGAGTCTAAAGTGGCATCAACAATG 319
Query 121 GCGTCTTTTATTATACATAAGCCAAAGGAGAGATCGCCTTTCACGAAAGCTGCTTTCAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GCGTCTTTTATTATACATAAGCCAAAGGAGAGATCGCCTTTCACGAAAGCTGCTTTCAAA 379
Query 181 ACGCTGGATAGCATCAAGGAGTTGGAACAGTTTATGTTGAAGCATCGGAAGGATTATGTT 240
||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 380 ACGCTTGATAGCATCAAGGAGTTGGAACTGTTTATGTTGAAGCATCGAAAGGATTATGTT 439
Query 241 GATCTGCACCGGACTACTGAACAGGAAAAGGATAGCATTGAACAAGAAATTACTGCTTTT 300
||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||
Sbjct 440 GATCTGCACCGGACTACAGAACAGGAAAAGGATAGTATTGAACAAGAAGTTGCTGCTTTT 499
Query 301 ATTAAAGCTTGCAAAGAACAGATCGATATTCTCAAAAACAGTATTAGAAATGAAGAAGCA 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 500 ATTAAAGCTTGCAAAGAACAGATCGATATTCTCATAAACAGTATTAGAAATGAAGAAGCA 559
Query 361 AACTCTAAAGGATGGCTTGGCCTTCCCGCAGATAACTTCAATGCTGATACTATAGCACAC 420
||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 560 AACTCCAAAGGATGGCTTGGCCTCCCCGCAGATAACTTCAATGCTGATTCTATAGCACAC 619
Query 421 AAACATGGAGTGGTTTTGATTCTGAGTGAGAAACTTCATTCAGTCACTGCCCAGTTTGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AAACATGGAGTGGTTTTGATTCTGAGTGAGAAACTTCATTCAGTCACTGCCCAGTTTGAT 679
Query 481 CAGCTTAGAGCTACTCGTTTCCAAGATATTATTAACAGAGCTATGCCAAGAAGAAAACCT 540
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 680 CAGCTTAGAGCTACTCGTTTCCAAGATATTATAAACAGAGCTATGCCGAGAAGAAAACCT 739
Query 541 AAGAGGATCATAAAGGAAGCTAATCCAA-TCATCACAACTCTGGCAAATTCGGAGTCCAT 599
|||||| ||||||||||||||| |||| | || |||||||||| |||||||||||||||
Sbjct 740 AAGAGGGTCATAAAGGAAGCTACCCCAATTAAT-ACAACTCTGGGAAATTCGGAGTCCAT 798
Query 600 AAAACCGGGTGAAATTCAGGCCCAACCTCGTAGAGTACAACAACAACAACTTCTAGACGA 659
| |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 799 AGAACCGGATGAAATCCAGGCCCAACCTCGTAGATTACAACAACAACAACTTCTAGACGA 858
Query 660 TGAAACACAAGCCCTTCAGGTAGAGCTAAGTAATCTTTTAGATGGTGCTAGGCAGACAGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TGAAACACAAGCCCTTCAGGTAGAGCTAAGTAATCTTTTAGATGGTGCTAGGCAGACAGA 918
Query 720 GACTAAGATGGTGGAGATGTCTGCATTGAACCACTTGATGGCAACTCATGTTCTTCAACA 779
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 919 AACTAAGATGGTGGAGATGTCTGCATTAAACCACTTGATGGCAACTCATGTTCTGCAGCA 978
Query 780 AGCCCAACAGATAGAGTTTCTTTATGACCAGGCGGTTGAGGCAACAAAGAACGTGGAGCT 839
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 979 AGCCCAACAGATAGAGTTTCTTTATGACCAGGCAGTTGAGGCAACAAAGAACGTGGAGCT 1038
Query 840 TGGAAACAAAGAGCTTTCTCAAGCAATCCAACGAAACAGCAGCAGCAGAACCTTTCTCTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TGGAAACAAAGAGCTTTCTCAAGCAATCCAACGAAACAGCAGCAGCAGAACCTTTCTCTT 1098
Query 900 ACTGTTTTTCTTCGTCCTTACTTTCTCCGTTTTGTTCTTGGATTGGTACAGTTAAGAGAC 959
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1099 ACTGTTTTTCTTCGTCCTTACTTTCTCCGTCTTGTTCTTGGATTGGTACAGTTAAAAAAC 1158
Query 960 CATTCTCCAACAACA 974
|||||||||||||||
Sbjct 1159 CATTCTCCAACAACA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5