BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923668

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46050.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   220    1e-56
  AT5G03000.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   154    1e-36


> AT3G46050.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113

 Score =  220 bits (119),  Expect = 1e-56
 Identities = 261/328 (80%), Gaps = 15/328 (5%)
 Strand=Plus/Plus

Query  435  AGATTTACATAATCGGAGGCACCGAG-TCCAATAGTATTGAGGATTGGGGAGAGGTTTAT  493
            |||| ||| | || ||||||  | || ||||| | ||| |||||||||||||||||||||
Sbjct  497  AGATCTACGTGATTGGAGGC-TCTAGTTCCAACAATATCGAGGATTGGGGAGAGGTTTAT  555

Query  494  GACCCAAAGACACAAACGTGGGAGCCAGTATTGCCCACAACACTAGATCTCACTAAACAA  553
            ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||   |||
Sbjct  556  GACCCAAAGACCCAAACTTGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGTTCAA  615

Query  554  ATGAGTGTTGTTCCAGGTAAATTGGTAATGGGTGGCAAAGTGTATGCCATGAA-GGATGG  612
            |||||||| ||||||||||  ||||||||| |||| ||||| |||| |||||| |||| |
Sbjct  616  ATGAGTGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGACATGAATGGATTG  675

Query  613  CTACAATCTTCGCTTG-ATGAAGGATTTTTGCTTGGTGGAGATAGACAACATGTTGTATC  671
              | |  |||  |||  | |||| || ||||||||||||||||||| |||||| |||  |
Sbjct  676  --A-AG-CTTAACTTTCA-GAAGAATATTTGCTTGGTGGAGATAGAGAACATGATGTGCC  730

Query  672  AAACACGGGTTTC-GAAAGGGATTTTACGTT-GGTCTGATCCAAAGAAAAATT-TGAGGT  728
            |||||  |||||  ||| ||| | ||| ||| ||| ||| ||| || || ||  || |||
Sbjct  731  AAACAAAGGTTTGTGAAGGGG-TGTTA-GTTTGGTGTGAACCAGAGGAAGATCGTG-GGT  787

Query  729  CGACTAGGGTTAAGGGACTTGAACGACT  756
             |  |  |||| | ||||||||| ||||
Sbjct  788  GGTGTCCGGTTGATGGACTTGAAGGACT  815


> AT5G03000.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:703268-704437 FORWARD LENGTH=1065
Length=1065

 Score =  154 bits (83),  Expect = 1e-36
 Identities = 191/241 (79%), Gaps = 15/241 (6%)
 Strand=Plus/Plus

Query  223  ATCTCTTATGGCTTCCCCTGAGCTAGAGGCCACACGAACCCGCATGGGAATAACAGAGAC  282
            |||||| || ||||| ||||| || |||||||| ||  ||||||| ||| ||||||||| 
Sbjct  213  ATCTCTCATCGCTTCTCCTGATCTCGAGGCCACGCGCTCCCGCATAGGAGTAACAGAGAA  272

Query  283  TTACCTCTGTGTCTGCTTAGACCT-GAATAAGCACTACTCTAGTTCTCACTGGTTCACAC  341
            | |||||| ||||||||| ||  | ||||||| || || ||| | ||| |||||||||||
Sbjct  273  TCACCTCTATGTCTGCTTGGA-GTCGAATAAGAACAACCCTAATCCTCGCTGGTTCACAC  331

Query  342  TTGCACCAATTCCCAAACAAGAGAAATT-ACAACAGAACGT---TTCGTTTCCT-ATGCT  396
            ||||||||||||||||| || ||||| | | |||  | | |   |||||||||| || | 
Sbjct  332  TTGCACCAATTCCCAAAGAACAGAAAGTGA-AACCTATCATCCCTTCGTTTCCTTAT-CA  389

Query  397  ATATCCCGA-AT-ACTCTACTGTTCTCTC-AGTTGGTTCAGAGATTTACATAATCGGAGG  453
            | ||||| | || | || ||| || |||| | |||| |||||||||||||| ||||||||
Sbjct  390  ACATCCC-ACATCA-TCAACTTTTGTCTCTA-TTGGCTCAGAGATTTACATCATCGGAGG  446

Query  454  C  454
            |
Sbjct  447  C  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40036615159


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5