BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923669 Length=1169 Score E Sequences producing significant alignments: (Bits) Value AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 283 2e-75 > AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:16916072-16917184 FORWARD LENGTH=1113 Length=1113 Score = 283 bits (153), Expect = 2e-75 Identities = 766/1045 (73%), Gaps = 110/1045 (11%) Strand=Plus/Plus Query 79 CGTTTTCTTCGTTGCCGTACGACCTCGTTTTCAATTGTTTGGCTCGTGTC-CCAAGATTC 137 ||||||||||||| ||| ||||| ||||| |||| ||||||||||||||| || |||||| Sbjct 50 CGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCTCC-AGATTC 108 Query 138 CATCATCAAACTCTATCTCTCGTCTCCAAGGATTTCCGATCACTCAT-GGCTTCCCCTCA 196 ||| ||| ||||||||| || |||| ||||| ||||||||||||| | | | |||| | | Sbjct 109 CATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC-TCCCGTGA 167 Query 197 GCTTGAGGCCACACGAACCAGAATGGGAATATCAGAGA-CTTAC-CTATGTCT-ATGT-G 252 ||| | || |||||| | | || |||| | | |||| || | ||| |||| | | | Sbjct 168 GCTCCACGCAACACGATCTTGCATCGGAAAAACCGAGAGTTTCCTCTACGTCTGCT-TAG 226 Query 253 -TCTGCAGCTTAGGTAACTACTA--C-GACAT-TAGTTCTCGCTGGTTCACAGTTGCAAC 307 ||||| |||| || | ||| | ||| | | | | || ||||| | |||| | | Sbjct 227 ACCTGCA---TAGG-AATTGCTATCCAGAC-TGTCCTCCACGATGGTTTATAGTTTCCCC 281 Query 308 AATTCCCAAACACGAGAAGTTGAAACCTATCCCTTC-GTTGTCTTATTTACACCCCCAGT 366 ||| ||||||| || || |||||||||||||||| ||| | | | | || | | Sbjct 282 GATTACCAAACA-GA-AA-CTGAAACCTATCCCTTCGGTT-AC-T-TGT-CA-----A-T 328 Query 367 TTTCAAGCC-TCCTCA-CAATTGGTTCAGAGATTTATAAT-ATCGGTGGTTTCTTTAATC 423 |||| || | | | |||| |||||| ||||||| || ||||| || ||| || | Sbjct 329 CCTCAA-CCGTTGT-ATCAATCGGTTCAAAGATTTA-CATAATCGGAGGCTTCGTTGA-- 383 Query 424 TaaagaaaagaaagaaaagcaaaagaGTGTTAGTTTTCGATTTTCTAACAAATCAACGGC 483 | | || | | |||| ||| || |||| |||||| || | | || | ||| Sbjct 384 T---G----GACATAGTAGCAGGAGATTGATAGTACTCGATTGTCCATCTCATGGATGGC 436 Query 484 GTAGACTCCCCAAGATGCGTGTACCTCGAGTAGATC-CAGCCGTTGATGTAATCAACGGT 542 ||||||||||| ||||||||||||||||| | | | |||| | |||||||||||||| | Sbjct 437 GTAGACTCCCCGAGATGCGTGTACCTCGA-CAAAACGCAGCAGCTGATGTAATCAACGAT 495 Query 543 AAGATCTATGTGATTGGAGGCAC-AGGGTCCAATAATATTGAGGATTGGGGAGAGGTTTA 601 |||||||| |||||||||||| | | | ||||| ||||| |||||||||||||||||||| Sbjct 496 AAGATCTACGTGATTGGAGGCTCTA-GTTCCAACAATATCGAGGATTGGGGAGAGGTTTA 554 Query 602 TGACCCAAAGACACAAA-TGTGGGAGCCAGTATTGCCCACAACACAAGACCTCACTATTC 660 |||||||||||| |||| | ||||||||||||||||||||||||| ||| || ||| ||| Sbjct 555 TGACCCAAAGACCCAAACT-TGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGTTC 613 Query 661 AAATGAATGTGGTTCCGGGAAGATTTGTGATGGGTGGCAAATTTTATGGCAT-ATGTGGT 719 |||||| ||||||||| || || || || ||| |||| ||| |||||| ||| | ||| Sbjct 614 AAATGAGTGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGACATGAA-TGG- 671 Query 720 GACTACAAGCTTCAATCATT--GACGGATTTTTGTTTGGTAGAGATAGACAACGTGTTGT 777 | | |||||| || | || || | || |||| ||||| |||||||| ||| || ||| Sbjct 672 -ATTG-AAGCTT-AA-CTTTCAGAAGAATATTTGCTTGGTGGAGATAGAGAACATGATGT 727 Query 778 ACTTAACAC-GTGTTTAC-ATAGGGATGTTATTTTGGTATGATTTAAAGGAACCTT-TGG 834 | |||| | |||| | |||| ||||| |||||| ||| | ||||| | ||| Sbjct 728 GCCAAACAAAG-GTTTGTGA-AGGGGTGTTAGTTTGGTGTGAACCAGAGGAAGATCGTGG 785 Query 835 GGTGGAATAAGGTTAAGGGACTTGACG-AG--C--A---G-CCGAAATT-TACTG---AT 881 | ||| | |||| | |||||||| | | | | | || || || | ||| || Sbjct 786 G-TGGTGTCCGGTTGATGGACTTGAAGGACTTCCCAATAGGCC-AACTTCTCCTGGTTAT 843 Query 882 CTTACTTCGTTGGCA-AGTTCC-ATCGGCGGAAGAAGAAGAGTGACAGTTTGGTGGAAGA 939 ||||| ||| ||||| | |||| | | || | |||||||||| |||||||||||| || Sbjct 844 CTTACCTCGGTGGCACA-TTCCGA-C--CG-AGGAAGAAGAGTAACAGTTTGGTGG--GA 896 Query 940 CGATAGTGGCTTGCGGTGA-AGGTAGCTTTTGTGAAGGGAATTTTTGTAAGGAATGTAAG 998 | | | | || | | | | | | | | | | | ||| |||||||||||| Sbjct 897 -G-TCG-G-CT-GTGTT-ACA--TCG-TCTAG-GTCCCAAATGGAC-TAAGGAATGTAAA 945 Query 999 TCAGAGATTTGGTGTGCAGAGATTTCATTTGAGAGACGAGACGGT-TTAGGTGAGCTTTG 1057 ||||||||||||||||||||||||| ||||||||||| |||| || || || |||| Sbjct 946 ACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACG---CGGTGTT-GGAAAGGTTTG 1001 Query 1058 GGGATTTGTTGAATGGTCTAA-AAT 1081 |||||||||||||||||||| ||| Sbjct 1002 TGGATTTGTTGAATGGTCTAAGAAT 1026 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57379222935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5