BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923669
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 283 2e-75
> AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113
Score = 283 bits (153), Expect = 2e-75
Identities = 766/1045 (73%), Gaps = 110/1045 (11%)
Strand=Plus/Plus
Query 79 CGTTTTCTTCGTTGCCGTACGACCTCGTTTTCAATTGTTTGGCTCGTGTC-CCAAGATTC 137
||||||||||||| ||| ||||| ||||| |||| ||||||||||||||| || ||||||
Sbjct 50 CGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCTCC-AGATTC 108
Query 138 CATCATCAAACTCTATCTCTCGTCTCCAAGGATTTCCGATCACTCAT-GGCTTCCCCTCA 196
||| ||| ||||||||| || |||| ||||| ||||||||||||| | | | |||| | |
Sbjct 109 CATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC-TCCCGTGA 167
Query 197 GCTTGAGGCCACACGAACCAGAATGGGAATATCAGAGA-CTTAC-CTATGTCT-ATGT-G 252
||| | || |||||| | | || |||| | | |||| || | ||| |||| | | |
Sbjct 168 GCTCCACGCAACACGATCTTGCATCGGAAAAACCGAGAGTTTCCTCTACGTCTGCT-TAG 226
Query 253 -TCTGCAGCTTAGGTAACTACTA--C-GACAT-TAGTTCTCGCTGGTTCACAGTTGCAAC 307
||||| |||| || | ||| | ||| | | | | || ||||| | |||| | |
Sbjct 227 ACCTGCA---TAGG-AATTGCTATCCAGAC-TGTCCTCCACGATGGTTTATAGTTTCCCC 281
Query 308 AATTCCCAAACACGAGAAGTTGAAACCTATCCCTTC-GTTGTCTTATTTACACCCCCAGT 366
||| ||||||| || || |||||||||||||||| ||| | | | | || | |
Sbjct 282 GATTACCAAACA-GA-AA-CTGAAACCTATCCCTTCGGTT-AC-T-TGT-CA-----A-T 328
Query 367 TTTCAAGCC-TCCTCA-CAATTGGTTCAGAGATTTATAAT-ATCGGTGGTTTCTTTAATC 423
|||| || | | | |||| |||||| ||||||| || ||||| || ||| || |
Sbjct 329 CCTCAA-CCGTTGT-ATCAATCGGTTCAAAGATTTA-CATAATCGGAGGCTTCGTTGA-- 383
Query 424 TaaagaaaagaaagaaaagcaaaagaGTGTTAGTTTTCGATTTTCTAACAAATCAACGGC 483
| | || | | |||| ||| || |||| |||||| || | | || | |||
Sbjct 384 T---G----GACATAGTAGCAGGAGATTGATAGTACTCGATTGTCCATCTCATGGATGGC 436
Query 484 GTAGACTCCCCAAGATGCGTGTACCTCGAGTAGATC-CAGCCGTTGATGTAATCAACGGT 542
||||||||||| ||||||||||||||||| | | | |||| | |||||||||||||| |
Sbjct 437 GTAGACTCCCCGAGATGCGTGTACCTCGA-CAAAACGCAGCAGCTGATGTAATCAACGAT 495
Query 543 AAGATCTATGTGATTGGAGGCAC-AGGGTCCAATAATATTGAGGATTGGGGAGAGGTTTA 601
|||||||| |||||||||||| | | | ||||| ||||| ||||||||||||||||||||
Sbjct 496 AAGATCTACGTGATTGGAGGCTCTA-GTTCCAACAATATCGAGGATTGGGGAGAGGTTTA 554
Query 602 TGACCCAAAGACACAAA-TGTGGGAGCCAGTATTGCCCACAACACAAGACCTCACTATTC 660
|||||||||||| |||| | ||||||||||||||||||||||||| ||| || ||| |||
Sbjct 555 TGACCCAAAGACCCAAACT-TGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGTTC 613
Query 661 AAATGAATGTGGTTCCGGGAAGATTTGTGATGGGTGGCAAATTTTATGGCAT-ATGTGGT 719
|||||| ||||||||| || || || || ||| |||| ||| |||||| ||| | |||
Sbjct 614 AAATGAGTGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGACATGAA-TGG- 671
Query 720 GACTACAAGCTTCAATCATT--GACGGATTTTTGTTTGGTAGAGATAGACAACGTGTTGT 777
| | |||||| || | || || | || |||| ||||| |||||||| ||| || |||
Sbjct 672 -ATTG-AAGCTT-AA-CTTTCAGAAGAATATTTGCTTGGTGGAGATAGAGAACATGATGT 727
Query 778 ACTTAACAC-GTGTTTAC-ATAGGGATGTTATTTTGGTATGATTTAAAGGAACCTT-TGG 834
| |||| | |||| | |||| ||||| |||||| ||| | ||||| | |||
Sbjct 728 GCCAAACAAAG-GTTTGTGA-AGGGGTGTTAGTTTGGTGTGAACCAGAGGAAGATCGTGG 785
Query 835 GGTGGAATAAGGTTAAGGGACTTGACG-AG--C--A---G-CCGAAATT-TACTG---AT 881
| ||| | |||| | |||||||| | | | | | || || || | ||| ||
Sbjct 786 G-TGGTGTCCGGTTGATGGACTTGAAGGACTTCCCAATAGGCC-AACTTCTCCTGGTTAT 843
Query 882 CTTACTTCGTTGGCA-AGTTCC-ATCGGCGGAAGAAGAAGAGTGACAGTTTGGTGGAAGA 939
||||| ||| ||||| | |||| | | || | |||||||||| |||||||||||| ||
Sbjct 844 CTTACCTCGGTGGCACA-TTCCGA-C--CG-AGGAAGAAGAGTAACAGTTTGGTGG--GA 896
Query 940 CGATAGTGGCTTGCGGTGA-AGGTAGCTTTTGTGAAGGGAATTTTTGTAAGGAATGTAAG 998
| | | | || | | | | | | | | | | | ||| ||||||||||||
Sbjct 897 -G-TCG-G-CT-GTGTT-ACA--TCG-TCTAG-GTCCCAAATGGAC-TAAGGAATGTAAA 945
Query 999 TCAGAGATTTGGTGTGCAGAGATTTCATTTGAGAGACGAGACGGT-TTAGGTGAGCTTTG 1057
||||||||||||||||||||||||| ||||||||||| |||| || || || ||||
Sbjct 946 ACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACG---CGGTGTT-GGAAAGGTTTG 1001
Query 1058 GGGATTTGTTGAATGGTCTAA-AAT 1081
|||||||||||||||||||| |||
Sbjct 1002 TGGATTTGTTGAATGGTCTAAGAAT 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5