BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923670
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51760.1 | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family... 2220 0.0
AT1G51780.1 | Symbols: ILL5 | IAA-leucine resistant (ILR)-like ... 1583 0.0
> AT1G51760.1 | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family
protein | chr1:19199419-19201642 FORWARD LENGTH=1684
Length=1684
Score = 2220 bits (1202), Expect = 0.0
Identities = 1309/1362 (96%), Gaps = 2/1362 (0%)
Strand=Plus/Plus
Query 1 AATCGAATCCGATATAAGCCATGAGTTTCTGCAAATGGGTTTCTTTTGTTTTGATCCTTC 60
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 AATCGAATCCGAGATAAGTCATGAGTTTCTTCAAATGGGTTTCTTTTGTTTTGATCCTTC 183
Query 61 ACTTGCTTAATCCGAGTCTGATTTCATGTTCCTCTAATGGGTTATCTCAAATCCCATCAA 120
||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 184 ACTTGCTTAATCCGACTCTGATTTCATGTTCCTCTAATGGGTTATCTCAAATACCTTCAA 243
Query 121 AGTTTCTTACTTTGGCTAAAAGGAATGATTTTTTCGATTGGATGGTTAGAATCAGAAGGA 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 244 AGTTTCTTACTTTGGCTAAAAGGAATGATTTTTTCGATTGGATGGTTGGAATCAGAAGGA 303
Query 181 GAATCCATGAGAATCCAGAGTTAGGTTATGAGGAAGTAGAGACATCTAAGCTTGTTAGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAATCCATGAGAATCCAGAGTTAGGTTATGAGGAAGTAGAGACATCTAAGCTTGTTAGAG 363
Query 241 CAGAATTGGAGAAGATGGGTGTGTCTTTTAAGTACCCAGTTGCTGTTACTGGTGTTGTTG 300
|||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 364 CAGAGTTGGAGAAGATGGGTGTTTCTTATAAGTACCCAGTTGCTGTTACTGGTGTTGTTG 423
Query 301 GATATGTTGGAACTGGTCAAGCTCCTTTTGTTGCTTTGAGGGCTGATATGGATGCACTTC 360
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 424 GGTATGTTGGAACTGGTCATGCTCCTTTTGTTGCTTTAAGGGCTGATATGGATGCACTTG 483
Query 361 CTATTCAGGAAATGGTGGAATGGGAACACAAGAGTAAGGTTCCAGGGAAGATGCACGCTT 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CTATGCAGGAAATGGTGGAATGGGAACACAAGAGTAAGGTTCCAGGGAAGATGCACGCTT 543
Query 421 GTGGACATGACGCTCACACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACATG 480
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 544 GTGGACATGACGCTCACACTACGATGCTTCTCGGTGCTGCAAAATTGCTCAAAGAACATG 603
Query 481 AAGAAGAGCTACAGGGTACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGGAG 540
|||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct 604 AAGAAGAGCTACAGGGCACAGTGGTTCTAGTTTTCCAACCAGCTGAGGAAGGAGGAGGAG 663
Query 541 GTGCAAAGAAAATCGTGGAGGCTGGAGTATTGGAGAATGTGAGCGCAATCTTTGGATTAC 600
|||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 664 GTGCAAAGAAGATTGTGGAGGCTGGAGTGTTGGAGAATGTGAGTGCAATCTTTGGATTAC 723
Query 601 ATGTCACAAATCAATTGGCATTAGGTCAAGTGAGCTCAAGAGAGGGTCCAATGTTGGCTG 660
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 724 ATGTCACAAATCAATTGGCATTAGGTCAAGTGAGCTCGAGAGAGGGTCCTATGTTGGCTG 783
Query 661 GTAGCGGGTTTTTCAAAGCTAAGATAAGCGGGAAAGGAGGTCACGCAGCTCTTCCTCAGC 720
|||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 784 GTAGTGGCTTTTTCAAAGCTAAGATAAGCGGGAAAGGAGGCCACGCAGCTCTTCCGCAGC 843
Query 721 ACT-CCATAGATCCCATATTGGCAGCTTCGAATGTTATTGTTAGCTTACAACACCTCGTT 779
| | |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 844 A-TACCATAGATCCGATACTGGCAGCTTCAAATGTTATTGTTAGCTTACAACACCTCGTT 902
Query 780 TCACGAGAGGCAGATCCTTTAGACTCACAGGTTGTTACAGTTGCTAAATTTGAAGGCGGT 839
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 903 TCACGAGAGGCAGATCCTTTAGACTCTCAGGTGGTTACAGTTGCTAAATTTGAAGGCGGT 962
Query 840 GGTGCTTTCAATGTGATTCCAGACTCTGTTACTATCGGTGGTACATTCCGAGCCTTTTCA 899
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 963 GGTGCTTTCAATGTGATTCCTGACTCTGTTACTATCGGTGGTACATTCCGAGCTTTTTCA 1022
Query 900 ACTAAAAGCTTTATGCAACTCAAGAAAAGAATTGAGCAGGTTATCACAAGGCAAGCGAGC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ACTAAAAGCTTTATGCAACTCAAGAAAAGAATTGAGCAGGTTATCACAAGGCAAGCGAGC 1082
Query 960 GTGAATATGTGTAATGCAACAGTGGATTTCATTGAAGAGGAGAAACCTTTTTTCCCACCA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GTGAATATGTGTAATGCAACAGTGGATTTCATTGAAGAGGAGAAACCTTTTTTCCCACCA 1142
Query 1020 ACTGTAAATGACAAAGACTTACACCAGTTTTTCAAGAACGTTTCCGGCGATATGTTAGGG 1079
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1143 ACTGTAAATGACAAAGCCTTACACCAGTTTTTCAAGAACGTTTCAGGCGATATGTTAGGG 1202
Query 1080 ATCGAGAATTACGTCGAGATGCAACCATTAATGGGATCAGAGGACTTCTCTTTCTACCAA 1139
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1203 ATTGAGAATTACGTCGAGATGCAACCATTAATGGGATCAGAAGATTTCTCTTTCTACCAA 1262
Query 1140 CAAGCAATCCCGGGACACTTTAGCTTCGTTGGAATGCAAAACAAAGCTCATTCACCAATG 1199
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1263 CAAGCAATCCCGGGACATTTTAGCTTCGTTGGAATGCAAAACAAAGCTCGTTCACCAATG 1322
Query 1200 GCGAATCCTCACTCGCCGTATTTTGAAGTTAACGAAGAACTACTACCTTATGGTGCTTCC 1259
|||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1323 GCGAGCCCTCACTCGCCGTACTTTGAAGTTAACGAAGAATTACTACCTTATGGTGCTTCC 1382
Query 1260 CTTCATGCTTCCATGGCCACAAGATATCTTCTTGAATTGAAAGCTTCAACTCTAAATAAG 1319
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1383 CTTCATGCTTCCATGGCCACAAGATATCTTCTTGAACTAAAAGCTTCAACTCTAAATAAG 1442
Query 1320 AGTTACAAAAAAGATGAACTTTGATGCCAACAAACATTGGCT 1361
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1443 AGTAACAAAAAAGATGAACTTTGATGCCAACAAACATTGGCT 1484
> AT1G51780.1 | Symbols: ILL5 | IAA-leucine resistant (ILR)-like
gene 5 | chr1:19204512-19206586 FORWARD LENGTH=1531
Length=1531
Score = 1583 bits (857), Expect = 0.0
Identities = 1146/1285 (89%), Gaps = 22/1285 (2%)
Strand=Plus/Plus
Query 21 ATGAGTTTCTGCAAATGGGTTTCTTTTGTTTTGATCCTTCACTTGCTTAATC-CGAGTCT 79
|||||||||||||||| ||||||||||||||||||||||||||| | ||| | || ||||
Sbjct 91 ATGAGTTTCTGCAAATTGGTTTCTTTTGTTTTGATCCTTCACTTAC-TAAACTCGTGTCT 149
Query 80 GATTTCATGTTCCTCTAATGGGTTATCTCAAATCCCATCAAAGTTT-CTTACTTTGGCTA 138
||||||||||||||| |||| || |||||||| || | ||| ||| |||| | | ||||
Sbjct 150 GATTTCATGTTCCTCGAATGATTTGTCTCAAATTCC-TAAAAATTTCCTTAGTCTAGCTA 208
Query 139 AAAG-GAATGATTTTTTCGATTGGATGGTTAGAATCAGAAGGAGAATCCATGAGAATCCA 197
|||| ||| ||||||||||||||||||||| |||| |||||||| ||||| ||||| |||
Sbjct 209 AAAGAGAA-GATTTTTTCGATTGGATGGTTGGAATAAGAAGGAGGATCCACGAGAACCCA 267
Query 198 GAGTTAGGTTATGAGGAAGTAGAGACATCTAAGCTTGT-TAGAGCAGAATTGGAGAAGAT 256
||||||||||| ||||||||||||||||||||||| || ||| |||||||||| |||||
Sbjct 268 GAGTTAGGTTACGAGGAAGTAGAGACATCTAAGCTAGTCAAGA-CAGAATTGGACAAGAT 326
Query 257 GGGTGTGTCTTTTAAGTACCCAGTTGCTGTTACTGGTGTTGTTGGATATGTTGGAACTGG 316
||||||||||| |||| | ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 327 GGGTGTGTCTTATAAGAATCCAGTTGCTGTAACTGGTGTTATTGGATATGTTGGAACTGG 386
Query 317 TCAAGCTCCTTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATTCAGGAAATGGT 376
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CCATGCCCCCTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATTCAGGAAATGGT 446
Query 377 GGAATGGGAACACAAGAGTAAGGTTCCAGGGAAGATGCACGCTTGTGGACATGACGCTCA 436
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 447 GGAATGGGAACACAAGAGTAAGATTCCAGGGAAGATGCACGCTTGCGGACATGACGCTCA 506
Query 437 CACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACATGAAGAAGAGCTACAGGG 496
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 507 CACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACACCAAGAAGAGCTACAGGG 566
Query 497 TACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGGAGGTGCAAAGAAAATCGT 556
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 567 TACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGCAGGTGCAAAGAAAATCGT 626
Query 557 GGAGGCTGGAGTATTGGAGAATGTGAGCGCAATCTTTGGATTACATGTCACAAATCAATT 616
||||||||||||||||||||||||| | |||||||||||||||||||| | |||| |||
Sbjct 627 GGAGGCTGGAGTATTGGAGAATGTGGGTGCAATCTTTGGATTACATGTTTCGAATCTATT 686
Query 617 GGCATTAGGTCAAGTGAGCTCAAGAGAGGGTCCAATGTTGGCTGGTAGCGGGTTTTTCAA 676
|| |||||||||| |||||||||||||||||| | || |||||||||| || ||||||
Sbjct 687 GGGATTAGGTCAACTGAGCTCAAGAGAGGGTCTATTGATGGCTGGTAGTGGACGTTTCAA 746
Query 677 AGCTAAGATAAGCGGGAAAGGAGGTCACGCAGCTCTTCCTCAGCACTCCATAGATCCCA- 735
||||| ||||||||||||||||||||| |||||||||||||| | |||||||||| |
Sbjct 747 AGCTACGATAAGCGGGAAAGGAGGTCATGCAGCTCTTCCTCAATTCGCCATAGATCC-AG 805
Query 736 TATTGGCAGCTTCGAATGTTATTGTTAGCTTACAACACCTCGTTTCACGAGAGGCAGATC 795
||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 806 TATTGGCAGCTTCAAATGTTATTCTGAGCTTACAACACCTCGTTTCACGAGAGGCAGATC 865
Query 796 CTTTAGACTCACAGGTTGTTACAGTTGCTAAATTTGAAGGCGGTGGTGCTTTCAATGTGA 855
|||||||||| ||||| ||||||||||||| |||||||||| ||| |||||| ||||| |
Sbjct 866 CTTTAGACTCGCAGGTGGTTACAGTTGCTACATTTGAAGGCAGTGATGCTTTTAATGTCA 925
Query 856 TTCCAGACTCTGTTACTATCGGTGGTACATTCCGAGCC-TTTTCAACTAAAAGCTTT-AT 913
|||| |||||||||||||||||||| |||||||||||| |||| | ||||||| ||| |
Sbjct 926 TTCCCGACTCTGTTACTATCGGTGGCACATTCCGAGCCCTTTT-ACCTAAAAGTTTTGA- 983
Query 914 GCAACTCAAGAAAAGAATTGAGCAGGTTATCACAAGGCAAGCGAGCGTGAATATGTGTAA 973
|||||||||| ||||||||| ||||||||||||| |||||| ||||| |||||||||||
Sbjct 984 GCAACTCAAGCAAAGAATTGTTCAGGTTATCACAACGCAAGCAAGCGTAAATATGTGTAA 1043
Query 974 TGCAACAGTGGA-TTTCATTGAAGAGGAGAAACCTTTTTTCCCACCAACTGTAAATGACA 1032
||||||||| || |||| ||||||| |||| ||| |||||| || ||||| || | |
Sbjct 1044 TGCAACAGTTGACTTTC-TTGAAGATGAGACTCCTCCTTTCCCGCCGACTGTGAACAATA 1102
Query 1033 AAGAC-TTACACCAGTTTTTCAAGAACGTTTCCG-GCGATATGTTAGGGATCGAGAATTA 1090
|| || || |||| ||||| |||||||||||| | | |||||||||||||| ||||||||
Sbjct 1103 AA-ACCTTGCACCTGTTTTACAAGAACGTTTCAGTG-GATATGTTAGGGATTGAGAATTA 1160
Query 1091 CGTCGAGATGCAACCATTAATGGGATCAGAGGACTTCT-CTTTCTACCAACAAGCAATCC 1149
|| |||| || |||| | |||| ||||||||| || | |||||||||||||||||||||
Sbjct 1161 TGTTGAGACGCTACCAGTGATGGTATCAGAGGATTT-TGCTTTCTACCAACAAGCAATCC 1219
Query 1150 CGGGACACTTTAGCTTCGTTGGAATGCAAAACAAAGCTCATTCACCAATGGCGAATCCTC 1209
||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||
Sbjct 1220 CGGGACATTTTAGCTTTGTTGGGATGCAGAACAAATCTCATTCACCAATGGCGAACCCTC 1279
Query 1210 ACTCGCCGTATTTTGAAGTTAACGAAGAACTACTACCTTATGGTGCTTCCCTTCATGCTT 1269
|||| |||| |||||||||||| |||||| |||| ||||||||||||||||||| |||||
Sbjct 1280 ACTCTCCGTTTTTTGAAGTTAATGAAGAATTACTCCCTTATGGTGCTTCCCTTCTTGCTT 1339
Query 1270 CCATGGCCACAAGATATCTTCTTGA 1294
| ||||||||||||||||||||||
Sbjct 1340 CTTTGGCCACAAGATATCTTCTTGA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5