BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923678

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51802.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   278    3e-74


> AT1G51802.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr1:19218592-19218783 REVERSE LENGTH=192
Length=192

 Score =  278 bits (150),  Expect = 3e-74
 Identities = 162/168 (96%), Gaps = 0/168 (0%)
 Strand=Plus/Plus

Query  141  TATGGGGTATCTTTGAGTTCATCAACATGTGTCATTCAATGGTGTGCCACTCAATGTAAG  200
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  25   TATGGGGTATCTTTGAGTTCATCAACATGTGTCATTCAATGGTGTGCCATTCAATGTAAG  84

Query  201  AGGAAAGAAGCTAATGGGATCGGTACATGCAAGCCAAGGCCCAATCAAGAGAAAGTACAA  260
            |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct  85   AGGAAAGAAGCTAATGGGATCGGTACTTGCAAGCCAAGGCCCAATCAAGGGAAAATACAA  144

Query  261  TATAGAAAACTGAAAGAAGAATGTCACTGCGTTTATAAATGTTCATAA  308
            ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  145  TATAGAAAACTAAAAGAAGAATGCCACTGCGTTTATAAATGTTCATAA  192



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5