BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923683
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51830.1 | Symbols: | Leucine-rich repeat protein kinase fa... 752 0.0
AT1G51820.1 | Symbols: | Leucine-rich repeat protein kinase fa... 459 3e-128
AT1G51805.1 | Symbols: | Leucine-rich repeat protein kinase fa... 346 3e-94
> AT1G51830.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:19243025-19246010 REVERSE LENGTH=2082
Length=2082
Score = 752 bits (407), Expect = 0.0
Identities = 475/507 (94%), Gaps = 7/507 (1%)
Strand=Plus/Plus
Query 117 ttttttttGGCTAAACGATTGTGACAGGTTCCCGGATGATGTCTATGATCGGAAATGGTA 176
|||||||| |||||||||||| |||||||||||||||||| ||||| || ||||||||
Sbjct 8 TTTTTTTT--ATAAACGATTGTGTCAGGTTCCCGGATGATGTGTATGACCGAAAATGGTA 65
Query 177 CCCGGTCTTCCAGAACTCATGGACGCAAGTAACTACGAATCTCAATCTAAATATTAGCAC 236
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 66 CCCGATCTTCCAGAACTCATGGACGCAAGTAACTACGAATCTCAATGTAAATATTAGCAC 125
Query 237 TATTTATTATGAACTACCACAAGGTGTAATGGCAACAGCCGCAACGCCGCTAAACACTAA 296
|| | |||||||||||||||| | |||||| |||||||||| ||||||||||| ||||
Sbjct 126 TA--T-TTATGAACTACCACAAAGCGTAATGTCAACAGCCGCGACGCCGCTAAATGCTAA 182
Query 297 TGCGACCTTGAACATTAAATGGACAATAGAGCCTCCTACTACACCATTTTACTCCTACAT 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGCGACCTTGAACATTACATGGACAATAGAGCCTCCTACTACACCATTTTACTCCTACAT 242
Query 357 TCACTTTGCAGAGCTTCAATCTCTAAGGGCAAATGATACACGAGAATTCAATGTGACGTT 416
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 243 TCACTTTGCAGAGCTTCAATCTCTAAGGGCCAATGATACAAGAGAATTCAATGTGACGTT 302
Query 417 GAATGGAGAATATACATTTGGACCTTATAGTCCTAAACCGCTAAAAACCGAAACCTTACA 476
|||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 303 GAATGGGGAGTATACAATTGGACCTTATAGTCCTAAACCGCTAAAAACCGAAACCATACA 362
Query 477 AGACTTAAGCCCTGAGCAATGTACTGGAGGGGCATGTATTTTGCAGCTTGTGAAGACGTC 536
|||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||| |
Sbjct 363 AGACTTAAGCCCCGAGCAATGTAATGGAGGGGCGTGTATTTTGCAGCTTGTGGAGACG-C 421
Query 537 -AAAATCAACTCTTCCGCCTTTACTTAATGCTATTGAGGCTTTCACTGTGATTGATTTCC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGAAATCAACTCTTCCGCCTTTACTTAATGCTATTGAGGCTTTCACTGTGATTGATTTCC 481
Query 596 CGCAAATGGAGACAAATGAAGATGATG 622
|||||||||||||||||||||||||||
Sbjct 482 CGCAAATGGAGACAAATGAAGATGATG 508
Score = 521 bits (282), Expect = 4e-147
Identities = 351/385 (91%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 625 TTATCTTCAAGTGGTTTAACTGGGGTCATCACACAAGGCTTTAAAAATCTAACCCATCTT 684
||||||||||||||||||| ||||||||| ||||||||| || |||||||||||||||||
Sbjct 658 TTATCTTCAAGTGGTTTAAATGGGGTCATTACACAAGGCATTCAAAATCTAACCCATCTT 717
Query 685 CAATACCTGGACTTGTCTGATAACAATTTAACTGGAGAAATACCTAAATTTCTAGCTGAC 744
|||||| |||||||||| ||||| ||||||||||| || |||||||||||||||||||||
Sbjct 718 CAATACTTGGACTTGTCAGATAATAATTTAACTGGTGATATACCTAAATTTCTAGCTGAC 777
Query 745 ATCCAATCACTCTTGGTTATAAACTTAAGTGGTAATAATCTCACTGGCTCGGTTCCTTTC 804
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 778 ATACAATCACTCTTGGTTATAAACTTAAGTGGTAATAATCTCACTGGATCGGTGCCTCTC 837
Query 805 TCACTTCTTCAGAAGAAAGGATTGAAACTAAATGTCCAAGGCAATCCTCATCTCCTTTGC 864
||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||
Sbjct 838 TCACTTCTTCAGAAGAAAGGATTGAAATTAAATGTCGAAGGCAACCCTCATCTTCTTTGC 897
Query 865 ACAGATGGTTTATGTGCAAACAAAGGAGATGAACATAAGAAAAAGAGCATCACAGTACCA 924
|||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||
Sbjct 898 ACAGATGGTTTATGTGTTAACAAAGGAGATGGACATAAGAAAAAGAGCATCATAGCACCA 957
Query 925 CTTGTCGCATCGATTGCTTCAATAGCTGGTCTTATATGTGCATTGGTTCT-TCTTTTTAT 983
| |||||||| ||||||||||||||| ||||||| ||||||||||||| | ||||| |
Sbjct 958 GTGGTCGCATCAATTGCTTCAATAGCTATTCTTATAGGTGCATTGGTTCTGT-TTTTTGT 1016
Query 984 TCTCAAAAAGAAAACGCCATTAAAA 1008
||| ||||||||||||| || ||||
Sbjct 1017 TCTTAAAAAGAAAACGCAATCAAAA 1041
> AT1G51820.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:19237407-19241883 REVERSE LENGTH=2658
Length=2658
Score = 459 bits (248), Expect = 3e-128
Identities = 411/488 (84%), Gaps = 17/488 (3%)
Strand=Plus/Plus
Query 142 AGGTTCCCGGATGATGTCTATGATCGGAAATGGTACCCGGTCTTCCA-GAACTCATGGAC 200
||||||||||||||||||||||| || |||||||||||| ||||| | | ||||||||||
Sbjct 598 AGGTTCCCGGATGATGTCTATGACCGTAAATGGTACCCGCTCTTCGACG-ACTCATGGAC 656
Query 201 GCAAGTAACTACGAATCTCAATCTAAATATTAGCACTATTTA-TTATGAACTACCACAAG 259
||||||||||| |||||||| | || | | | || ||| ||||||||||||||||
Sbjct 657 ACAAGTAACTACAAATCTCAAAGTGAACA-CA--AGTA-TTACTTATGAACTACCACAAA 712
Query 260 GTGTAATGGCAACAGCCGCAACGCCGCTAAACACTAATG-CGACCTTGAACATTAAATGG 318
|||||||||||| |||||||||||| | || |||| | | ||||||||||||| ||||
Sbjct 713 GTGTAATGGCAAAAGCCGCAACGCCAATTAAGGCTAACGAC-ACCTTGAACATTACATGG 771
Query 319 ACAATAGAGCCTCCTACTACACCA-TTTTACTCCTACATTCACTTTGCAGAGCTTCAATC 377
|| ||||||| ||||||||| || |||||||| ||| | ||| |||||||| |||| |
Sbjct 772 ACGGTAGAGCCCCCTACTACA-CAGTTTTACTCTTACGTACACATTGCAGAGATTCAGGC 830
Query 378 TCTAAGGGCAAATGATACACGAGAATTCAATGTGACGTTGAATGGAGAATATACATTTGG 437
|||||||||||| || ||| | || ||||||||||| |||||||||||||||| |||||
Sbjct 831 TCTAAGGGCAAACGAGACAAGGGAGTTCAATGTGACACTGAATGGAGAATATACTTTTGG 890
Query 438 ACCTTATAGTCCTAAACCGCTAAAAACCGAAACCTTACAAGACTTAAGCCCTGAGCAATG 497
||||| |||||||| |||||||||||||| | || || ||||||||||| | ||||||
Sbjct 891 ACCTTTTAGTCCTATACCGCTAAAAACCGCATCCATAGTCGACTTAAGCCCAGGGCAATG 950
Query 498 -TACTGGAGGG-GCATGTATTTTGCAGCTTGTGAAGACGTC-AAAATCAACTCTTCCGCC 554
| ||||||| | ||| ||||||||| ||||||||||| | ||||| || ||||| ||
Sbjct 951 CGA-TGGAGGGAG-ATGCATTTTGCAGGTTGTGAAGACG-CTGAAATCTACGCTTCCTCC 1007
Query 555 TTTACTTAATGCTATTGAGGCTTTCACTGTGATTGATTTCCCGCAAATGGAGACAAATGA 614
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1008 TTTACTTAATGCTATCGAAGCTTTCACCGTGATTGATTTCCCGCAAATGGAGACAAATGA 1067
Query 615 AGATGATG 622
| ||||||
Sbjct 1068 AAATGATG 1075
> AT1G51805.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:19220977-19225689 REVERSE LENGTH=2964
Length=2964
Score = 346 bits (187), Expect = 3e-94
Identities = 326/390 (84%), Gaps = 22/390 (6%)
Strand=Plus/Plus
Query 242 ATTATGAACTACCACAAGGTGTAATGGCAACAGCCGCAACGCCGCTAAAC-ACTAATGCG 300
||||||| || |||||| |||||||||||| | |||||| || |||||| | || || |
Sbjct 797 ATTATGATTTATCACAAGATGTAATGGCAACGGGCGCAACACCTCTAAACGA-TAGTGAG 855
Query 301 ACCTTGAACATTAAATGG-ACAATAGAGCCTCCTACTACACCA-TTTTACTCCTACATTC 358
|| |||||||||| |||| || ||||||||||||||||| | ||||||||||||| |
Sbjct 856 ACATTGAACATTACATGGAAC-GTAGAGCCTCCTACTACA-AAGGTTTACTCCTACATGC 913
Query 359 ACTTTGCAGAGCTTCA-ATCTCTAAGGGCAAATGATACACGAGAATTCAATGTGACGTTG 417
|||||||||||||| | | | |||||||| || |||||| | ||||||||||||| | ||
Sbjct 914 ACTTTGCAGAGCTTGAGA-CACTAAGGGCCAACGATACAAGGGAATTCAATGTGATGCTG 972
Query 418 AATGGAGAATATAC--ATTTGGACCTTATAGTCCTAA-ACCGCTAAAAACCGAAAC-CTT 473
|||||| ||| || ||||||||||| ||||| || ||||||||| ||||||||
Sbjct 973 AATGGA-AAT-GACTTGTTTGGACCTTACAGTCC-AATACCGCTAAAGACCGAAACAGAA 1029
Query 474 ACAAGACTTAAGCCCTGAGCAATGTACTG--GA-GGGGCATGTATTTTGCAGCTTGTGAA 530
|| | |||||| || ||| |||| | | || ||||||||||||||||||||||||||
Sbjct 1030 ACCA-ACTTAAAACCAGAGGAATG--C-GAAGATGGGGCATGTATTTTGCAGCTTGTGAA 1085
Query 531 GACGTCAAAATCAACTCTTCCGCCTTTACTTAATGCTATTGAGGCTTTCACTGTGATTGA 590
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1086 GACGTCAAAATCAACTCTTCCGCCTTTACTTAATGCTATAGAGGCTTTCACCGTGATTGA 1145
Query 591 TTTCCCGCAAATGGAGACAAATGAAGATGA 620
||||| ||| |||||||| ||||||||||
Sbjct 1146 TTTCCTACAAGTGGAGACAGATGAAGATGA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5