BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923695

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51930.1 | Symbols:  | RING/U-box superfamily protein | chr1...   497    3e-140


> AT1G51930.1 | Symbols:  | RING/U-box superfamily protein | chr1:19294838-19295236 
REVERSE LENGTH=399
Length=399

 Score =  497 bits (269),  Expect = 3e-140
 Identities = 351/389 (90%), Gaps = 11/389 (3%)
 Strand=Plus/Plus

Query  22   ATGGATACTACTGATGAAATTATCATTGGTTTGTTCATCATCTCCTTGATCGTCACCGTA  81
            |||||||||| ||| |||||| |||||||||| | |||||||  ||||||||||| ||| 
Sbjct  1    ATGGATACTATTGACGAAATTCTCATTGGTTTCTCCATCATCGGCTTGATCGTCATCGTG  60

Query  82   ATTGCTCACTGTTGCGAAAATACAAG-TCTCCCTCCCACGGGATTACCTCCCGAGACAAT  140
            |||||| |||||||||| ||||  || || |||||||||| |||||||||||||||||||
Sbjct  61   ATTGCTAACTGTTGCGACAATA-TAGATCCCCCTCCCACGAGATTACCTCCCGAGACAAT  119

Query  141  CCACCAAACTGTAAAGCCTCAACAAGACATTGAAACCGGACAGAGGAAAACCCTAGTTTT  200
            ||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct  120  CCATCAAACTGTACAGCCTCAACAAGACATTGAAACCGGACAGAGCAAAGCCCTAGTGTT  179

Query  201  CAAAGATATCAAAGAAG--G-AGGA-G-A-AGAAGAAG--GG-AGTGGTAAACGTTTTTG  251
            |||||||||||||||||  | |||| | | ||||||||  ||  ||||||||||||||||
Sbjct  180  CAAAGATATCAAAGAAGAAGAAGGAGGAAGAGAAGAAGAAGGTGGTGGTAAACGTTTTTG  239

Query  252  TCCAATTTGTTTGGAAGAGTACGAGGATGATCATCAGATTAGGCGATTAAAAAAGTGTGG  311
            ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct  240  TCCAATTTGTTTGGAAGAGTACGAGGATGATCATCAGATTAGGCGTTTAAGAAACTGTGG  299

Query  312  ACATGTTTTTCATCTTTTGTGTATTGATTCTTGGCTTACACGGGAACGAAGCTGTCCAAG  371
            ||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||
Sbjct  300  ACATGTTTTTCATCTTTTGTGTATTGATTCTTGGCTTACACAGAAACAAAACTGTCCAAG  359

Query  372  TTGTCGCCGTTCTGTTGATTTGATGAGTT  400
            |||||||||||||||||||||||||||||
Sbjct  360  TTGTCGCCGTTCTGTTGATTTGATGAGTT  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20006564102


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5