BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923698
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51950.1 | Symbols: IAA18 | indole-3-acetic acid inducible 1... 1295 0.0
AT3G16500.1 | Symbols: PAP1, IAA26 | phytochrome-associated pro... 398 6e-110
> AT1G51950.1 | Symbols: IAA18 | indole-3-acetic acid inducible
18 | chr1:19305315-19307510 FORWARD LENGTH=1539
Length=1539
Score = 1295 bits (701), Expect = 0.0
Identities = 790/832 (95%), Gaps = 9/832 (1%)
Strand=Plus/Plus
Query 20 TAATGAAAGGG-TATTCAAGAAACGGTGAAATCTCTCCCAAGCTGCTTGACTTGATGATT 78
||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 354 TAATG-GAGGGTTATTCAAGAAACGGTGAAATCTCTCCGAAGCTGCTTGACTTGATGATT 412
Query 79 CCACAAGAGAGAAGAAATTGGATTCACGATGAGAAAAACTCTGTTTTCAAAACAGAGGAG 138
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 413 CCACAAGAGAGAAGAAATTGGTTTCACGATGAGAAAAACTCTGTTTTCAAAACAGAGGAG 472
Query 139 AAGAAACTTGAGCTAAAGCTTGGACCACCTGGTGAAGAAGATGATGATGATTCATCGATA 198
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 473 AAGAAGCTTGAGCTAAAGCTTGGACCACCTGGTGAAGAAGATGATGATGA---ATCGATG 529
Query 199 ATAAGACACATCAAGAAAGAACCAAAAGACAAATCTATCCTCTCTCTCGCTGGCAAACAC 258
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 530 ATAAGACACATGAAGAAAGAACCAAAAGACAAATCTATCCTCTCTCTCGCTGGCAAATAC 589
Query 259 TTCTCTCCTTCTTCCACCAAAACCACATCCCATAAAAGAACTGCTCCTGGTCCAGTGGTG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTCTCTCCTTCTTCCACCAAAACCACATCCCATAAAAGAACTGCTCCTGGTCCAGTGGTG 649
Query 319 GGATGGCCTCCCGTTCGATCATTCAGAAAGAATTTAGCTAATGGAAGCTCTTCAAAGCTT 378
||||||||||| |||||||| ||||| ||||||||||||| |||||| ||||||||||||
Sbjct 650 GGATGGCCTCCGGTTCGATCCTTCAGGAAGAATTTAGCTAGTGGAAGTTCTTCAAAGCTT 709
Query 379 GGAAATGACTCCACCACCTCCAATGGTGTTTTCCTCAAGAACCAAAAGTGTGATGATGAT 438
||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 710 GGAAATGACTCAACCACCTCCAATGGTGTTACCCTCAAGAACCAAAAGTGTGATGCTGCT 769
Query 439 GTTAAGACAATGGAACCAAAGAGACAAGGAGGCATGTTTGTAAAGATCAACATGTATGGT 498
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 770 GCTAAGACAACAGAACCAAAGAGACAAGGAGGCATGTTTGTGAAGATCAACATGTATGGT 829
Query 499 GTACCCATTGGTCGTAAAGTTGATCTC-GATGCTCATAATAGCTATGAGCAGTTGTCTTT 557
|| |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 830 GTTCCCATTGGTCGTAAAGTTGATCTCAG-TGCTCATAATAGCTATGAGCAGTTATCTTT 888
Query 558 CACTGTTGACAAGCTCTTCAGAGGTCTTCTTGCAGCTCAAAGAGACTTATC-ATCATCTA 616
||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 889 CACAGTTGACAAGCTCTTCAGAGGTCTTCTTGCAGCTCAAAGAGACTT-TCCATCATCCA 947
Query 617 TAGAAGATGAAAAACCAATCACTGGATTATTGGATGGGAATGGAGAATATACTCTTACTT 676
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 948 TAGAAGATGAAAAACCAATCACTGGATTATTAGATGGGAATGGAGAATATACTCTTACAT 1007
Query 677 ATGAAGACAACGAAGGAGACAAGATGCTTGTAGGAGATGTTCCATGGCAAATGTTTGTAT 736
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1008 ATGAAGACAATGAAGGAGACAAGATGCTTGTAGGAGATGTTCCATGGCAAATGTTTGTGT 1067
Query 737 CTTCAGTGAAGAGGCTGCGTGTGATTAAAACCTCTGAGATTTCTTCAGCATTAACATATG 796
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1068 CTTCGGTGAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACATATG 1127
Query 797 GAAATGGTAAGCAAGAGAAGATGAGAATATGAAGAAAAAGATCTTTTACAGC 848
||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1128 GAAATGGTAAGCAAGAGAAAATGAGAAGATGAAGAAAAAGATCTTTTACAGC 1179
> AT3G16500.1 | Symbols: PAP1, IAA26 | phytochrome-associated protein
1 | chr3:5612500-5614410 REVERSE LENGTH=1313
Length=1313
Score = 398 bits (215), Expect = 6e-110
Identities = 510/645 (79%), Gaps = 49/645 (8%)
Strand=Plus/Plus
Query 199 ATAAGACACATCAAGAAAGAACCAAAAGACAAATCTATCCTCTCTCTCGCTGGCAAACAC 258
|||||| |||||||||| ||| || ||||||||||| ||| || | | |||||| |||
Sbjct 386 ATAAGAAACATCAAGAAGGAAACAGAAGACAAATCTTTCCACTGTTTTAATGGCAATCAC 445
Query 259 TTCTCTCCTT----C--TTCCAC--C-AAAAC-CACATC-C-CATAAAAGAACTGCTCCT 306
|||||||||| | |||| | | |||||| | || |||||||||||||||
Sbjct 446 TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGAACTGCTCCT 505
Query 307 GGTCCAGTGGTGGGATGGCCTCCCGTTCGATCATTCAGAAAGAATTTAGCTAATGGAAGC 366
|||||||||||||| |||||||| ||||| || |||||||||||| |||| | ||||
Sbjct 506 GGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAAGAATCTAGCGAGCACAAGC 565
Query 367 TCTTCAAAGCTTGGAAATGACTCCACCACCTCCAATGGTGTTTTCCTCAAGAACCAA-AA 425
||||||||||| || || || ||| | || | ||| | | | || | | || ||
Sbjct 566 TCTTCAAAGCTAGGTAACGAATCCTC----TC-A-TGGAGGT--C---AA-ATC-AACAA 612
Query 426 GTGTGATGATGATGTTAAGACAA-TGGAA-CCAAAGA-GACAAGGAGGCATGTTTGTAAA 482
| ||||||||| || || |||| | ||| |||| || | ||||| |||||||| ||
Sbjct 613 GAGTGATGATGGTGAAAA-ACAAGTTGAAACCAA-GAAGG-AAGGA---ATGTTTGTCAA 666
Query 483 GATCAACATGTATGGTGTACCCATTGGTCGTAAAGTTGATCTCGATGCTCATAATAGCTA 542
|||||||||| ||||||| || ||||||||||||||||||||| ||||| | || |||||
Sbjct 667 GATCAACATGGATGGTGTTCCTATTGGTCGTAAAGTTGATCTCAATGCTTACAACAGCTA 726
Query 543 TGAGCAGTTGTCTTTCA-CTGTTGACAAGCTCTTCAGAGGTCTTCTTGCAGCTCAAAGAG 601
|| ||| | ||||| | |||||||| |||||||||||||| || |||||||||||||
Sbjct 727 CGAACAGCTCTCTTTTGTC-GTTGACAAACTCTTCAGAGGTCTACTCGCAGCTCAAAGAG 785
Query 602 ACT-TATC--ATCATCTATAGAAGATGAAAAACCAATCACTGGATTATTGGATGGGAATG 658
| | | || || || | || ||| || ||||| |||| ||||||||| |||||||| |
Sbjct 786 A-TATCTCTGATGGTC-A-AGGAGAAGAGAAACCTATCATTGGATTATTAGATGGGAAAG 842
Query 659 GAGAATATACTCTTA-CTTATGAAGACAACGAAGGAGACAAGATGCTTGTAGGAGATGTT 717
|||||| |||| ||| | ||||||||||| ||||| |||||||||||||| || ||||||
Sbjct 843 GAGAATTTACT-TTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTT 901
Query 718 CCATGGCAAATGTTTGTATCTTCAGTGAAGAGGCTGCGTGTGATTAAAACCTCTGAGATT 777
||||||||||||||||| || || |||||||| |||||||||||||||| ||||||||||
Sbjct 902 CCATGGCAAATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAGATT 961
Query 778 TCTTCAGCATTAACATATGGAAATG--GTAAGCAAGAGAAGATGA 820
|| || || || |||| |||| || ||||||||||||||||||
Sbjct 962 TCATCTGCCTTGACATTTGGA--TGCAGTAAGCAAGAGAAGATGA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5