BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923701

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51970.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   532    7e-151


> AT1G51970.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G10455.1); 
Has 29 Blast hits to 29 proteins in 4 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19314542-19314916 
REVERSE LENGTH=375
Length=375

 Score =  532 bits (288),  Expect = 7e-151
 Identities = 348/377 (92%), Gaps = 3/377 (1%)
 Strand=Plus/Plus

Query  22   ATGGCTCAAGAACTCGATTTGGAATTGGGTTTAGCTCCATATGATCCATGGGTTCTAAAG  81
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTCAAGAACTCGATTTGGAATTGGGTTTAGCTCCATATGATCCATGGGTTCTAAAG  60

Query  82   AAGAATCTAACCGAGAGTGATCTTAGTCGTTATGGTTTTGTTATTCTACCGAAACAAGAT  141
            |||||| |||||||||||||||||| |    |||||||| |||||||||| |||||||||
Sbjct  61   AAGAATTTAACCGAGAGTGATCTTAATA---ATGGTTTTATTATTCTACCTAAACAAGAT  117

Query  142  TTTGAAAAAATAATTCCGCATATGGAACGTGGTTTGGTCGAGAATTTGGGAAACGGTGTT  201
            |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  118  TTTGAAAAAATAATTCGGCAGATGGAACGTGGTTTGGTCAAGAATTTGGGAAACGGTGTT  177

Query  202  GAAGTGAAAGTCCATATTGTAGAGGAAGGTCATGAATCTGATGATTACACATTAACACTG  261
            |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct  178  GAAGTGAAAGTCCATATTATAGAGGAAGGTCCTGAATCTGATGATTACACATTAACACTG  237

Query  262  ATCAAGTGCAGCGGCAGGTATATGTTGAGAGGAGGATGGTACAATATGGTTAAAGCTAAA  321
             |||||||||| ||||  | |||||| |||||||||||||||||||||||||||||||||
Sbjct  238  GTCAAGTGCAGAGGCAACTGTATGTTCAGAGGAGGATGGTACAATATGGTTAAAGCTAAA  297

Query  322  GGTTACAAAACAAACGATGAAATTGGACTTACGTGGGATAAGTGGACTCGAAGATTCCTC  381
             |||||||| || |||||||||||||||||| ||||||||||||| ||||||||||  | 
Sbjct  298  TGTTACAAACCAGACGATGAAATTGGACTTATGTGGGATAAGTGGTCTCGAAGATTTTTA  357

Query  382  CTCCACCATATTAACTA  398
             | ||||||||||||||
Sbjct  358  TTTCACCATATTAACTA  374



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5