BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923702

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51970.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   394    3e-109


> AT1G51970.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G10455.1); 
Has 29 Blast hits to 29 proteins in 4 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19314542-19314916 
REVERSE LENGTH=375
Length=375

 Score =  394 bits (213),  Expect = 3e-109
 Identities = 315/364 (87%), Gaps = 8/364 (2%)
 Strand=Plus/Plus

Query  21   ATGGCTCAAGAGCTCGATTTGGAATTGGGTTTGGCTCCACATGAACCATGGATTGTAAAG  80
            ||||||||||| |||||||||||||||||||| |||||| |||| |||||| || |||||
Sbjct  1    ATGGCTCAAGAACTCGATTTGGAATTGGGTTTAGCTCCATATGATCCATGGGTTCTAAAG  60

Query  81   AAGAAAATAACCGAGACTGATCTTCGTTATGGCGGTTCGGTTATTCTACCGAAACAAGAG  140
            |||||  ||||||||| |||||||  | ||   ||||   |||||||||| |||||||| 
Sbjct  61   AAGAATTTAACCGAGAGTGATCTTAATAAT---GGTTTTATTATTCTACCTAAACAAGAT  117

Query  141  TTTGAAACTTTTATAATACCGCAGATGGAACGTGGTTTGGTCGAGAATTTGGGAAACGGT  200
            |||||||     ||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct  118  TTTGAAA---AAATAATTCGGCAGATGGAACGTGGTTTGGTCAAGAATTTGGGAAACGGT  174

Query  201  GTTGAAGTGAAAGTCCATATTGTAGAGGAAGGTCATGAATCTAATGATTACACACTAACG  260
            ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |||| 
Sbjct  175  GTTGAAGTGAAAGTCCATATTATAGAGGAAGGTCCTGAATCTGATGATTACACATTAACA  234

Query  261  CTGGTCAAGTGCA-ATGGGAGTTATATGTTGAGTGGAGGATGGCACAATATGGCTAAAGC  319
            ||||||||||||| | || |  | |||||| || ||||||||| ||||||||| ||||||
Sbjct  235  CTGGTCAAGTGCAGA-GGCAACTGTATGTTCAGAGGAGGATGGTACAATATGGTTAAAGC  293

Query  320  TAACGGTTACAAACCAAACGATGAAATTGGACTTATGTGGGATAAGTGATCTGGAAGATT  379
            |||  ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct  294  TAAATGTTACAAACCAGACGATGAAATTGGACTTATGTGGGATAAGTGGTCTCGAAGATT  353

Query  380  CTTA  383
             |||
Sbjct  354  TTTA  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5