BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923704
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51990.1 | Symbols: | O-methyltransferase family protein | ... 433 2e-120
> AT1G51990.1 | Symbols: | O-methyltransferase family protein
| chr1:19330949-19332667 FORWARD LENGTH=1092
Length=1092
Score = 433 bits (234), Expect = 2e-120
Identities = 309/344 (90%), Gaps = 10/344 (3%)
Strand=Plus/Plus
Query 122 ACAAAAGCCAAGGGAGGTGTATGGTCTTACCTCACGGAGGCAATACAAGAAGGTGGAGCA 181
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 388 ACAAAAGCCAAGGGAGGTGTATGGTCTTACCTTACGGAGGCAATACAAGAAGGCGGAGCA 447
Query 182 TCGGCATATATATGAGGGAGCTAATGGGGCATTGGTCTTTGAATACATGAAGGAAAATGC 241
||||| || ||| ||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 448 TCGGC----ATGGGAGCGAGCTAATGAGGCATTGATCTTTGAATACATGAAGAAAAATG- 502
Query 242 A-AATACT-AAGGAAAGATTCAACGAGGCGATGACGAGTCATACATCAATAGTAATGAAG 299
| ||| | ||| ||| ||||| || ||||||||| ||||||||||||||||||||||
Sbjct 503 AGAAT-TTAAAGAAAATTTTCAATGAATCGATGACGAATCATACATCAATAGTAATGAAG 561
Query 300 AAAATACTAGAGAATTACAATGGTTTTGAAAGTTTGAGTGA-TTTGGTAGATGTAGGAGG 358
||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||||||
Sbjct 562 AAAATACTAGAGAATTACATTGGTTTTGAAGGTGTGAGTGACTTTG-TAGATGTAGGAGG 620
Query 359 AAGCTTAGGCAGTAATCTTACCCAAATCCTCTCCAAGTACCTGCATATCAAAGGTGTCAA 418
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 621 AAGCTTAGGCAGTAATCTTGCCCAAATCCTCTCCAAGTACCCACATATCAAAGGCATCAA 680
Query 419 CTTCGACTTGCCTCACATTGTCAAAGAAGCTCCCCAAATTCATG 462
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct 681 CTTCGACTTGCCTCACATAGTCAAAGAAGCTCCCCAAATTCATG 724
Score = 388 bits (210), Expect = 3e-107
Identities = 277/309 (90%), Gaps = 5/309 (2%)
Strand=Plus/Plus
Query 481 AGTGGATACTTCATGATTGGAACGATGAAAAATGTGTGGAAATACTAAAAAAGTGTAAGA 540
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 788 AGTGGATACTTCATGATTGGAACGATGAAAAATGTGTGGAGATACTAAAAAACTGTAAGA 847
Query 541 AAGCACTACCGGAAACTGGAAGAATCATTGTAATTGAAATGATATTACTGCGAGAAGTAT 600
||||| ||||||||||||| |||| |||||||||||||||||| ||| ||||| ||||
Sbjct 848 AAGCATTACCGGAAACTGGGCGAATAATTGTAATTGAAATGATAGTACCCCGAGAGGTAT 907
Query 601 CAGAAACCGATGTTGCAACCAAGAATTCATTGTGTTTAGATTTGACAATGATGA-CTATA 659
||||||||||| ||||||||||||| ||| | || ||||||||| ||||||| || ||
Sbjct 908 CAGAAACCGATCTTGCAACCAAGAACTCACTCAGTGCAGATTTGACGATGATGAGCT-TA 966
Query 660 ACGTCTGGGGGGAAAGAGAGAACCGAAGAGGAATTTGAAGATCTAGCTAAGAAAGCTGGC 719
|||||||| || |||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 967 ACGTCTGGAGGCAAAGAGAGAACCAAAAAGGAATTTGAAGATCTAGCTAAGGAAGCTGGC 1026
Query 720 TTTAAGCCCCCAAAGATTATTTACGGCGCTTATTCTTTTTGGATGATCATTGAATTATAT 779
||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 1027 TTTAAGCTCCCAAAGATTATTTACGGCGCGTATTCTTATTGGAT---CATTGAATTATAT 1083
Query 780 CCTACTTGA 788
|||| ||||
Sbjct 1084 CCTAATTGA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5