BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923717
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52130.1 | Symbols: | Mannose-binding lectin superfamily pr... 616 1e-175
AT1G60110.1 | Symbols: | Mannose-binding lectin superfamily pr... 100 1e-20
AT1G60130.1 | Symbols: | Mannose-binding lectin superfamily pr... 97.1 2e-19
> AT1G52130.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19400619-19402363 REVERSE LENGTH=1452
Length=1452
Score = 616 bits (333), Expect = 1e-175
Identities = 516/597 (86%), Gaps = 42/597 (7%)
Strand=Plus/Plus
Query 6 AAGTTTAAGCTAGCAATGGACGG-AAAAAACATCATTGGGTTTCACGGTTCTGCTGATGC 64
||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||||||
Sbjct 349 AAGTTTACGCTAGCAATGGAGGGCAAAAAA-ATCATTGGGTTTCACGGTTTTGCTGATGT 407
Query 65 TAACCTCAGAGTTCTTGGAGCATATTTTACTTCGATTACTCCTGCAAGAATGGAAGCCAA 124
||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct 408 TAACCTCAGAGCTCTTGGAGCATATGTTACTTGGATAACTCCTGCAAGAATGGAAGCCAA 467
Query 125 AGGGGACAAAGGAGGCAGGGAATGGGATGATGGAGGAGTTTATGAGGCTGTAACAAAGAT 184
||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 468 AGGGGGCAAAGGAGGCAATGAATGGGATGATGGAGGTGACTATGAGGCTGTAACAAAGAT 527
Query 185 TCATGGACGAAGTGATCATAACGGCATAAAAGACATCACATTCGATTATGTTGACAAGGA 244
||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 528 TCATGGACGAAGTGATCATAAAGGTATAAAAGACATCATATTCGATTATGTTGACAAGGA 587
Query 245 TCG-CATCCCAAA-GATGAAACCCATGGTTCTACCTCGG-T-----TT--G-A---GA-- 288
| | ||||||||| | ||||||||||||| ||||||||| | || | | ||
Sbjct 588 TGGGCATCCCAAAAG-TGAAACCCATGGTCCTACCTCGGGTCAGGGTTACGTACTTGAGC 646
Query 289 --TT--A-A----CCATATCGACAAGGAATATCTGCTGTCTATCGATGGTTACTATGATG 339
|| | | |||| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 647 CGTTTGAGATTAACCATCTCGACAAGGAATATCTGATGTCTATTGATGGTTACTATGATG 706
Query 340 A-GACATCAGGTGTCATTCAAGCACTGCAATTCAATACCAACATGAAGCCTTGGGCACTT 398
| | |||| |||||||||||||||||||||||||| |||||||||||| ||| || ||||
Sbjct 707 ATG-CATCCGGTGTCATTCAAGCACTGCAATTCAAAACCAACATGAAGACTTCGGAACTT 765
Query 399 ATGGGCTACTATGAAGATGATGCTGTGAAGTTTACAATTGGATGCAATGGTAATAAGATC 458
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 766 ATGGGCTACTATGACGATGATGCTGTGAAGTTTACAATTGGATGCACTGTTAATAAGATC 825
Query 459 ATTGGGTTTCATTTTCATGGATACGCTGAG-AAGAACCTAAACTCTCTTGGAGCATATTT 517
|||||||||||| ||| | |||| | ||||||||| | ||||| |||||||||||
Sbjct 826 ATTGGGTTTCAT------GGACATGCTG-GCAAGAACCTATATTCTCTCGGAGCATATTT 878
Query 518 CACAATACTTCCTCGCTACCTAAATTGGAATAC-ATAGATAGTTTTCGTGGTAAGCT 573
||||| |||||||| || |||||||||||||| | |||||||||||||| |||||
Sbjct 879 CACAACACTTCCTC--TAACTAAATTGGAATACGA-AGATAGTTTTCGTGAAAAGCT 932
> AT1G60110.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:22168502-22170649 FORWARD LENGTH=1797
Length=1797
Score = 100 bits (54), Expect = 1e-20
Identities = 188/249 (76%), Gaps = 23/249 (9%)
Strand=Plus/Plus
Query 281 GTTTGAGATTAACCATATCGACAAGGAATATCTGCTGTCTATCGATGGTTACTATGATG- 339
|||||||||||||||| |||||||||||||| || | ||| | || || |||||||| |
Sbjct 645 GTTTGAGATTAACCATCTCGACAAGGAATATTTGATTTCTGTTGAAGGCTACTATGACGA 704
Query 340 A---GACATCAGGTGTCATTCAAGCACTGCAATTCAATACCAACATGAAGCCTTGGGCAC 396
| || ||| || |||||||||| | | |||||||| || || || | | ||| | |
Sbjct 705 AGGGGA-ATCCGGGGTCATTCAAGGAATTCAATTCAAAACTAATATCAGGACTTCTG-AA 762
Query 397 TT-ATGGGCTACTATGAAGATGATGCT-GTGAAGTTTACAATTGGATG-CAATGGTAATA 453
|| ||||| | | || | || | | | ||| ||| | ||| | | |||||| || |
Sbjct 763 TTGATGGG--A-GA-CAACA-GA-GGTAG-GAAATTTTCCCTTGCA-GCCAATGGAAAGA 814
Query 454 AGATCATTGGGTTTCATTTTCATGGATACGCTGAGAAGAACCTAAACTCTCTTGGAGCAT 513
|||| || ||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 815 AGATTATCGGG------TTTCATGGATATGCTGAGAAGAATCTAAACTCTCTTGGAGCAT 868
Query 514 ATTTCACAA 522
|||||||||
Sbjct 869 ATTTCACAA 877
> AT1G60130.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:22174179-22176321 FORWARD LENGTH=1803
Length=1803
Score = 97.1 bits (52), Expect = 2e-19
Identities = 205/275 (75%), Gaps = 26/275 (9%)
Strand=Plus/Plus
Query 282 TTT-GAGATTAACCATATCGACAAGGAATATCTGCTGTCTATCGATGGTTACTATGATG- 339
||| |||||||||||| ||||||| |||||| || | ||| | || ||||| ||||| |
Sbjct 675 TTTCGAGATTAACCATCTCGACAATGAATATATGGTATCTGTTGAGGGTTATTATGACGA 734
Query 340 A-GACA-TCAGGTG-TCATTCAAGCACTGCAATTCA-ATACCAACATGAAGCCTTGGGCA 395
| | | || || | ||||||| | | | ||||||| | || || || ||| ||| | |
Sbjct 735 AGGTGATTC-GGGGATCATTCAGGGAATTCAATTCAGA-ACTAATATCAAGACTTCAGAA 792
Query 396 CTTATGGGCTACTATGAAGATGATGCTGTGAAGTTTACAATTGGATG-CAATGGTAATAA 454
|| || || | || || | ||| | ||||||| || ||| | | |||||| || ||
Sbjct 793 CTGATAGG--A-TA-CAACA--ATGGTAAGAAGTTTTCACTTGCA-GCCAATGGAAAGAA 845
Query 455 GATCATTGGGTTTCATTTTCATGGATACGCTGAGAAGAACCTAAACTCTCTTGGAGCATA 514
|||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||
Sbjct 846 GATCATTGGG------TTTCATGGATATGCTGACCAGAATCTAAACTCTCTTGGAGCATA 899
Query 515 TTTCACAATACT-TCCTCGCTACCTAAATTGGAAT 548
|||||||| || |||| || |||||||||||
Sbjct 900 TTTCACAAC-CTCTCCTTT-TAT-TAAATTGGAAT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27578546703
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5