BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923719
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52140.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1088 0.0
> AT1G52140.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G16330.1);
Has 114 Blast hits to 114 proteins in 15 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407364-19408254
REVERSE LENGTH=891
Length=891
Score = 1088 bits (589), Expect = 0.0
Identities = 641/667 (96%), Gaps = 0/667 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTAAAAAATCTCGATATGGATCAAAACGTACCAATAAGCAAGAAGCTATGGAACA 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 TCTCTCTAAAAAATCTTGATATGGATCAAAACGTACCAATAAGCAAGAAGCTATGGAACA 109
Query 61 TCGTACGTTTTCTCTTGTACATGATCCGCAAAGGCGTCTCAAAAAACAAACTCATCGCTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 TCGTACGTTTTCTCTTGTACATGATCCGCAAAGGCGTCTCAAAAAACAAACTCATCGCTG 169
Query 121 ACTTCAACGCCACTCTCAAACGTGGCAAGAATCTCATGTTCCACCACCGTCGTCGTGTCC 180
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 170 ACTTCAACGCCACTCTCAAACGTGGCAAGAACCTCATGTTCCACCAACGTCGTCGTGTCC 229
Query 181 ACGCCGGTTCCACCTCCTCAGATGCTCTAAACGCTGCTTCAGCCACCGCGTCATCACGAC 240
|||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 230 ACGCCGGTTCCACCGCCTCAGCCGCTCTAAACGCTACTTCAGCCACCGCGTCATCGCGAC 289
Query 241 AAGAATACGAGTTTAGCTGTAGCAACACTCCAAACTATTCATTCCCTTTCTCTAATATGG 300
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 290 AAGAGTACGAGTTTAGCTGCAGCAACACTCCAAACTATTCATTCCCTTTCTCTAATATGG 349
Query 301 CTTTCATTAGGAAAAAGAGTCACAATAATCTCTTCACGTGTGGTCAAACGCCTCAGACGC 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CTTTCATGAGGAAAAAGAGTCACAATAATCTCTTCACGTGTGGTCAAACGCCTCAGACGC 409
Query 361 TTGACGACGATGTAGCCGCCGCTAGAGCCGTTCTTGAGCTTCTTAATGGCGTTGGAGACA 420
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 410 TTGACGACGACGTAGCCGCCGCTAGAGCCGTTCTTGAGCTTCTTAACGGCGTTGGAGAGA 469
Query 421 AAGGAAACGTCACGCCGGCAGATTTAACGGTGGCTTTGTCTCCTTACTTCCCCGGGTTTG 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 470 AAGGAAACGTCACGCCGGCAGATTTAACGGTGGCTTTGTCTCCTTATTTCCCCGGTTTTG 529
Query 481 GACGGACTCCATTGGTTAGACCGCTAAGAGTAACGGACTCACCGTTTCCGTTAACGCCGG 540
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 530 GACAGACTCCATTGGTTAGACCGTTAAGAGTAACGGACTCACCGTTTCCGTTAACGCCGG 589
Query 541 AAAACGGTGACGTGGCTAATAGACACGTGGACAAAGCAGCTGATGATTTTATAAAGAAGT 600
|||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 590 AAAATGGTGATGTGGCTAATGGACACGTTGACAAAGCAGCTGATGATTTTATAAAGAAGT 649
Query 601 TTTATAAGAACTTGAATCAGCAGAAAAAGATGATTCAGTTCAGCTAAATATTAATCTGAA 660
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||
Sbjct 650 TTTATAAGAACTTGAATCAGCAGAAAAAAATGATTGAGTTCAGCTAAATATTAATCCGAA 709
Query 661 TCGTGTG 667
| |||||
Sbjct 710 TTGTGTG 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5