BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923719 Length=667 Score E Sequences producing significant alignments: (Bits) Value AT1G52140.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1088 0.0 > AT1G52140.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407364-19408254 REVERSE LENGTH=891 Length=891 Score = 1088 bits (589), Expect = 0.0 Identities = 641/667 (96%), Gaps = 0/667 (0%) Strand=Plus/Plus Query 1 TCTCTCTAAAAAATCTCGATATGGATCAAAACGTACCAATAAGCAAGAAGCTATGGAACA 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 50 TCTCTCTAAAAAATCTTGATATGGATCAAAACGTACCAATAAGCAAGAAGCTATGGAACA 109 Query 61 TCGTACGTTTTCTCTTGTACATGATCCGCAAAGGCGTCTCAAAAAACAAACTCATCGCTG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110 TCGTACGTTTTCTCTTGTACATGATCCGCAAAGGCGTCTCAAAAAACAAACTCATCGCTG 169 Query 121 ACTTCAACGCCACTCTCAAACGTGGCAAGAATCTCATGTTCCACCACCGTCGTCGTGTCC 180 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 170 ACTTCAACGCCACTCTCAAACGTGGCAAGAACCTCATGTTCCACCAACGTCGTCGTGTCC 229 Query 181 ACGCCGGTTCCACCTCCTCAGATGCTCTAAACGCTGCTTCAGCCACCGCGTCATCACGAC 240 |||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |||| Sbjct 230 ACGCCGGTTCCACCGCCTCAGCCGCTCTAAACGCTACTTCAGCCACCGCGTCATCGCGAC 289 Query 241 AAGAATACGAGTTTAGCTGTAGCAACACTCCAAACTATTCATTCCCTTTCTCTAATATGG 300 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 290 AAGAGTACGAGTTTAGCTGCAGCAACACTCCAAACTATTCATTCCCTTTCTCTAATATGG 349 Query 301 CTTTCATTAGGAAAAAGAGTCACAATAATCTCTTCACGTGTGGTCAAACGCCTCAGACGC 360 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 CTTTCATGAGGAAAAAGAGTCACAATAATCTCTTCACGTGTGGTCAAACGCCTCAGACGC 409 Query 361 TTGACGACGATGTAGCCGCCGCTAGAGCCGTTCTTGAGCTTCTTAATGGCGTTGGAGACA 420 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 410 TTGACGACGACGTAGCCGCCGCTAGAGCCGTTCTTGAGCTTCTTAACGGCGTTGGAGAGA 469 Query 421 AAGGAAACGTCACGCCGGCAGATTTAACGGTGGCTTTGTCTCCTTACTTCCCCGGGTTTG 480 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 470 AAGGAAACGTCACGCCGGCAGATTTAACGGTGGCTTTGTCTCCTTATTTCCCCGGTTTTG 529 Query 481 GACGGACTCCATTGGTTAGACCGCTAAGAGTAACGGACTCACCGTTTCCGTTAACGCCGG 540 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 530 GACAGACTCCATTGGTTAGACCGTTAAGAGTAACGGACTCACCGTTTCCGTTAACGCCGG 589 Query 541 AAAACGGTGACGTGGCTAATAGACACGTGGACAAAGCAGCTGATGATTTTATAAAGAAGT 600 |||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 590 AAAATGGTGATGTGGCTAATGGACACGTTGACAAAGCAGCTGATGATTTTATAAAGAAGT 649 Query 601 TTTATAAGAACTTGAATCAGCAGAAAAAGATGATTCAGTTCAGCTAAATATTAATCTGAA 660 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| Sbjct 650 TTTATAAGAACTTGAATCAGCAGAAAAAAATGATTGAGTTCAGCTAAATATTAATCCGAA 709 Query 661 TCGTGTG 667 | ||||| Sbjct 710 TTGTGTG 716 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32250322374 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5