BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923721

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52155.1 | Symbols:  | unknown protein; Has 37 Blast hits to...   309    7e-84


> AT1G52155.1 | Symbols:  | unknown protein; Has 37 Blast hits 
to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes 
- 2 (source: NCBI BLink). | chr1:19417666-19419853 FORWARD 
LENGTH=1222
Length=1222

 Score =  309 bits (167),  Expect = 7e-84
 Identities = 192/203 (95%), Gaps = 5/203 (2%)
 Strand=Plus/Plus

Query  21   ATGGAAGAATCTCAGGGCATCAATGGCGTCGATGATTCATATCGTCATCTTCCAATTCTC  80
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGGAAGAATCTCAGGGCATCAATGGCGTCGATGATTCATATCGTCATCTCCCAATTCTC  60

Query  81   TACTTAACTTTTTTAACGATCTGGTCTTTCTCCGCTTGTTCTTGGACAGTTAACACTTTC  140
            |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61   TACTTAACCTTTTTAACGATCTGGTCTTTCTCCGCTTGTTCTTGGACGGTTAACACTTTC  120

Query  141  AAAAATCGACACTTTCAGAGCAGACAAATAGTTTACAATGGACTCTTGCTTCAGTTCCAT  200
            |||||||| |||||||||| || | |  ||||||||||||||||||||||||||||||||
Sbjct  121  AAAAATCGCCACTTTCAGA-CA-A-A--TAGTTTACAATGGACTCTTGCTTCAGTTCCAT  175

Query  201  TAATCAAAGCATTACAGCTTACA  223
            |||||||||| |||||||| |||
Sbjct  176  TAATCAAAGCCTTACAGCTCACA  198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10003282051


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5