BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923731
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51800.1 | Symbols: | Leucine-rich repeat protein kinase fa... 710 0.0
> AT1G51800.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:19214148-19217970 FORWARD LENGTH=2877
Length=2877
Score = 710 bits (384), Expect = 0.0
Identities = 527/595 (89%), Gaps = 14/595 (2%)
Strand=Plus/Plus
Query 1 GCTTTAGAGCTTCGTAAACTCATGAACACAACTTACTGGACTCGACAAGGGTCCTTGCAG 60
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 566 GCTTTAGAGCTTCGTAAACTCATGAACACAACTTACTTGACTCGACAAGGTTCCTTGCAG 625
Query 61 ACCTTCATCAGAGCAGACGTTGGAGCAACTGTTAACCAA---TACAGGTACGGAATCGAT 117
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 626 ACCTTCATCAGAGCAGACGTTGGCGCGACTGTTAACCAAGGCTACAGGTACGGAATCGAT 685
Query 118 GTGTTTGATCGTGTCTGGACT-CGATATAATTTCAGG-AACTGTTCACGGATTAGTACCA 175
||||||||||||||||||||| || ||||||||| || ||||| |||| |||||||||||
Sbjct 686 GTGTTTGATCGTGTCTGGACTCCG-TATAATTTC-GGAAACTGGTCACAGATTAGTACCA 743
Query 176 ATCACACAGTAAACGTAAACAATGACTATCAACCACCAGAGATTGCTATGGTCACAGCCT 235
|||| |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 ATCAGTCAGTGAATATAAACAATGACTATCAACCACCAGAGATTGCTATGGTCACAGCCT 803
Query 236 CTGTTCCAACAGACCCGGACGCACCTATGAACATTTCGTTATTCGCGGTGGAACCTACTT 295
||||||||||||||||||||||| |||||||||||||| || ||| |||||||| ||||
Sbjct 804 CTGTTCCAACAGACCCGGACGCAGCTATGAACATTTCGCTAGTCGGGGTGGAACGTACTG 863
Query 296 TGCAACTCTTTATGGTAATGCATTTTGCGGAGATTCAAGAGCTCAAATCCAGCGACGTAA 355
|||| ||| | | ||||||||||| |||||||||||||||||||||| || ||
Sbjct 864 TGCAGTTCTACGTTTTTATGCATTTTGCAGAGATTCAAGAGCTCAAATCCAATGATACAA 923
Query 356 GAGAGTTTAATATCATGTACAATGGCAAGCATATCTACGGACCCATCAGACCGCTTAATT 415
||||||| || |||||||||||| |||||||||||| ||||| | ||||| |||||||
Sbjct 924 GAGAGTTCAACATCATGTACAATAACAAGCATATCTATGGACCTTTTAGACCACTTAATT 983
Query 416 TCACCACTTCTTCTGTATTTAC-CTCTACCGAAGTTGTTGCGGATG-AAAGTAGACAGTA 473
||||||| ||||| |||||||| | ||||||||||||| || |||| ||| | | |||||
Sbjct 984 TCACCACGTCTTCCGTATTTACAC-CTACCGAAGTTGTCGCCGATGCAAA-TGGGCAGTA 1041
Query 474 CACATTTTCGCTTCAAAGAACAGAAAATTCGACTTTACCTCCTCTGCTCAATGGC-ATGG 532
|| |||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||
Sbjct 1042 CATATTTTCGCTTCAAAGAACAGGAAATTCGACTTTACCTCCTCTGCTCAACG-CTATGG 1100
Query 533 AAATTTTTTGGGTTAACTTGTTGCCGCAACAAGAAACTGATAGAAAACAAGGTTG 587
| |||| || ||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 1101 AGATTTATTCGGTTAACTTGTTGCCGCAACAGGAAACTGATAGAAAAGAAG-TTG 1154
Score = 549 bits (297), Expect = 2e-155
Identities = 367/401 (92%), Gaps = 3/401 (1%)
Strand=Plus/Plus
Query 585 TTGGAACCTTTCTGCAAGTGGCTTGACCGGAGAGATATTGGAATTCATATCAGACCTTAC 644
|||| | || ||| |||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1292 TTGG-ATCTGTCTACAAGTGGCTTGACCGGAGAGATCTTAGAATTTATATCAGACCTTAC 1350
Query 645 CAGTTTAGAAGTTCTTGACTTGTCTAACAATTCTATGACTGGTTCAGTCCCAGAGTTTCT 704
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1351 CAGTTTAGAAGTTCTTGACTTGTCTAACAATTCTTTAACTGGTTCAGTCCCAGAGTTTCT 1410
Query 705 AGC-AGACATGGAAACCTTAAAACTCATAAATCTATCAGGAAATGAGCTAAATGGCTCAA 763
||| | | ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1411 AGCTA-ATATGGAAACCTTAAAACTCATAAATCTATCTGGAAATGAGCTAAATGGCTCTA 1469
Query 764 TCCCTGCAACTCTCCTTGATAAAGCACGAAGAGGATCGATTTCGATAAGTATCGAAGGAA 823
|||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||||
Sbjct 1470 TCCCTGCAACTCTCCTTGATAAAGAACGACGAGGATCTATTACGTTAAGTATCGAAGGAA 1529
Query 824 ATGTCGGGCTCTGTTCATCTACTTTATGCCCTACCACGGAAAAGAAGAAGAAAAACACTG 883
|| |||||| ||||||||||| | |||| |||||||| |||||||||||||||||||||
Sbjct 1530 ATACCGGGCTTTGTTCATCTACATCATGCGCTACCACGAAAAAGAAGAAGAAAAACACTG 1589
Query 884 TCATTGCACCTGTTGCTGCATCACTTGTTTTATTCTTCCTCATTGGAGCTGGAATCGTTA 943
| |||||||||||||| ||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1590 TTATTGCACCTGTTGCAGCATCACTTGTTTCAGTATTCCTCATTGGAGCTGGAATCGTTA 1649
Query 944 CTTTCCTTATCCTCAAGAGGAAGAAGAGTGCCAAACTTGGT 984
|||||||||||||||||||||||||||| |||| ||||||
Sbjct 1650 CTTTCCTTATCCTCAAGAGGAAGAAGAGAACCAAGCTTGGT 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5