BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923732
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52200.1 | Symbols: | PLAC8 family protein | chr1:19442068-... 859 0.0
> AT1G52200.1 | Symbols: | PLAC8 family protein | chr1:19442068-19443529
REVERSE LENGTH=898
Length=898
Score = 859 bits (465), Expect = 0.0
Identities = 569/617 (92%), Gaps = 15/617 (2%)
Strand=Plus/Plus
Query 1 CACTTAACATATCAATCAAATATGGGTCGTGTCAGTACTCCATCAGAGGAGGATCCAAAC 60
||||||||||||||| | | ||||||||||||| ||||||||| ||||||||| |||||
Sbjct 105 CACTTAACATATCAA-C-CA-ATGGGTCGTGTCACTACTCCATCCGAGGAGGATTCAAAC 161
Query 61 AACGGTATACCGGTTCCGCAAACGGGTACACCCAACCAGCGAACTGGAGTTCCCGTGAGT 120
|||||| ||||||||| |||| | |||||||| ||||||||||| ||||||||||||||
Sbjct 162 AACGGTTTACCGGTTCAGCAACCCGGTACACCGAACCAGCGAACCAGAGTTCCCGTGAGT 221
Query 121 CAATTCGCGCCGCCAAATTATCATCAAGCTAATGTTAACCTATCTGTTGGGAGGCCATGG 180
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 222 CAATTCGCGCCGCCGAATTATCAGCAAGCTAATGTTAACCTATCTGTTGGGAGGCCATGG 281
Query 181 AGCACTGGTTTGTTTGATTGTCAAGCAGACCAAACCAATGCCGTTATGAC-AGCAATCT- 238
||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||| |
Sbjct 282 AGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGCCGTTTTGACCA-CAAT-TG 339
Query 239 TACCTTGTGTGACATTTGGACAAATAGCGGAAGT-ACTGGATGAAGGAGAGACGACTTGT 297
|||||||||| ||||||||||||||||| ||||| | ||||||||||||||| |||||||
Sbjct 340 TACCTTGTGTAACATTTGGACAAATAGCAGAAGTGA-TGGATGAAGGAGAGATGACTTGT 398
Query 298 CCTCTTGGAAGTTTCATATACTTGTTGATGATGCCGGCTTTATGCTCACAATGGGTGATG 357
|||||||||| |||||| ||||| ||||||||||||||||||||||| || |||||||||
Sbjct 399 CCTCTTGGAACTTTCATGTACTTATTGATGATGCCGGCTTTATGCTCTCACTGGGTGATG 458
Query 358 GGATCAAAGTATAGGGAAAAAATAAGGAGAAAATTTAATCTTGTGGAAGCTCCATATTCG 417
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 459 GGATCAAAGTATAGAGAAAAAATGAGGAGAAAATTTAATCTTGTGGAAGCTCCATATTCA 518
Query 418 GATTGTGCCAGTCATGTCCTATGCCCTTGTTGCTCTCTTTGTCAAGAATACAGAGAGCTC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATTGTGCCAGTCATGTCCTATGCCCTTGTTGCTCTCTTTGTCAAGAATACAGAGAGCTC 578
Query 478 AAGGCTAGGAATCTTGATCCTTCTCTAGGTTGGAATGGGATACTTGCTCAA--A---G-A 531
||| |||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 579 AAGATTAGGAATCTTGATCCTTCTCTAGGTTGGAATGGGATACTTGCTCAAGGACAAGGA 638
Query 532 CAATATGAGAGTGAAGCCCCAAACTTTGCTCCTACAAATCAATATATGTCTAAGTAAACA 591
||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 639 CAATATGAGAGAGAAGCACCAAGTTTTGCTCCTACAAATCAATATATGTCTAAGTAAACA 698
Query 592 TTTGATTATAGTTGACT 608
||||||| |||||||||
Sbjct 699 TTTGATTTTAGTTGACT 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5