BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923739
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52220.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 699 0.0
> AT1G52220.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: photosystem I P subunit
(TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in
50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi
- 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink). | chr1:19453569-19454697 REVERSE LENGTH=764
Length=764
Score = 699 bits (378), Expect = 0.0
Identities = 470/512 (92%), Gaps = 16/512 (3%)
Strand=Plus/Plus
Query 3 TCTGtttt-tttttGGAAAAAATGGCTTCAATTTCTGCAACTTTGCCTTCGCCATTGTTA 61
||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 73 TCT-TTTTATTTTTTTAAAGAATGGCTTCAATTTCTGCAACTTTGCCTTCGCCATTGTTA 131
Query 62 CTCACACAGAGAAAATCTAATCTCACATCGATTCAAAAACTCCCATTTTCTCTAACTCGA 121
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CTCACACAGAGAAAATCCAATCTCACATCGATTCAAAAACTCCCATTTTCTCTAACTCGA 191
Query 122 GGTACGAATGACAT-TTTCTCCATTTTCACTAACTCTCGTTTTCACCTTAAGAGTAGCAT 180
|||||||||| || |||||||||| || || | |||| ||| | || |||||
Sbjct 192 GGTACGAATG--ATCTTTCTCCATTATCTCTTA--CTCG---AAACCCT---AGCAGCAT 241
Query 181 CACTCTTATGGTGAAAGCTAGT---GAAAGCTCAGAATCATCGACTGATCTCGATGTTGT 237
|| ||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 242 CAGTCTGATGGTGAAAGCTAGTGGAGAAAGCTCAGATTCATCGACTGATCTCGACGTTGT 301
Query 238 TAGTTCGATTCAGAATGTTTGGGATAAGTCTGAAGATCGGTTAGGTCTTATTGGTTTGAG 297
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 302 TAGTACGATTCAGAATGTTTGGGATAAGTCTGAAGATAGGTTAGGTCTTATTGGTTTGGG 361
Query 298 TTTTGCTGCTATTGTAGCTCTTTGGGCATCACTGAATCTCATCACGGCAATCGACAAATT 357
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 362 TTTTGCTGGTATTGTAGCTCTTTGGGCATCATTGAATCTCATCACGGCAATCGACAAATT 421
Query 358 GCCCGTTATCTCGACCGGATTCGAACTAGTTGGTATCTTGTTCTCCACGTGGTTCACGTA 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 GCCCGTTATCTCGAGCGGATTCGAACTAGTTGGTATCTTGTTCTCCACGTGGTTCACATA 481
Query 418 TCGATATCTCTTGTTCAAACCGGACAGAGAGGAGCTTTCCAAAATTGTCAAGAAATCAGT 477
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 482 TCGATATCTCTTGTTCAAACCGGACAGACAGGAGCTTTCGAAAATTGTCAAGAAATCAGT 541
Query 478 AGCAGATATACTTGGCCAGTGAACGTTGTGTG 509
||| |||||||||||||||||||| |||||||
Sbjct 542 AGCGGATATACTTGGCCAGTGAACCTTGTGTG 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5