BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923746
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52300.1 | Symbols: | Zinc-binding ribosomal protein family... 527 3e-149
AT3G16080.1 | Symbols: | Zinc-binding ribosomal protein family... 383 6e-106
> AT1G52300.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr1:19474898-19476234 REVERSE LENGTH=685
Length=685
Score = 527 bits (285), Expect = 3e-149
Identities = 317/333 (95%), Gaps = 0/333 (0%)
Strand=Plus/Plus
Query 4 aaaaaaCTCGCATTCGCTTCAATGGGAAAGGGAACGGGAAGTTTCGGAAAGAGAAGAAAC 63
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 62 AAAAAACTCGCATCCGCTTCAATGACTAAGGGAACGGGAAGTTTCGGAAAGAGAAGAAAC 121
Query 64 AAGAGTCACACACTCTGTGTCAGATGTGGCCGTCGCAGTTTCCATATCCAGAAGAGCCGT 123
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 122 AAGAGTCACACACTCTGTGTCAGATGTGGCCGTCGCAGTTTCCACATCCAGAAGAGTCGT 181
Query 124 TGCTCTGCTTGTGCTTATCCCGCAGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCA 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 182 TGCTCTGCTTGTGCTTATCCCGCCGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCA 241
Query 184 ATCCGTAGAAAGACTACTGGAACTGGAAGGATGAGGTATCTCCGCAATGTCCCTCGCAGG 243
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 242 ATCCGTAGAAAGACTACTGGAACTGGAAGGATGAGGTATCTTCGCAATGTGCCTCGCAGG 301
Query 244 TTCAAGACCGGTTTCAGAGAAGGTACCGAAGCCAAGCCAAGGAACAAGGCAGCAGCTTCA 303
|||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 302 TTCAAGACCGGTTTCAGAGAGGGTACCGAAGCCAAGCCAAGGAACAAGGGAGTTGCTTCA 361
Query 304 TCAGCTTAAACTGGTTTTTGAGCATTGAGGGAG 336
|||||||||||| |||||||||||| ||||||
Sbjct 362 TCAGCTTAAACTTGTTTTTGAGCATCAAGGGAG 394
> AT3G16080.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr3:5454818-5455927 FORWARD LENGTH=612
Length=612
Score = 383 bits (207), Expect = 6e-106
Identities = 270/300 (90%), Gaps = 6/300 (2%)
Strand=Plus/Plus
Query 17 TCGCTTCAATGGGAAAGGGAAC-GGGAAGTTTCGGAAAGAGAAGAAACAAGAGTCACACA 75
||||| |||||||||||||||| ||| |||||||| ||||| || |||||||||||||||
Sbjct 67 TCGCTCCAATGGGAAAGGGAACAGGG-AGTTTCGGTAAGAGGAGGAACAAGAGTCACACA 125
Query 76 CTCTGTGTCAGATGTGGCCGTCGCAGTTTCCATATCCAGAAGAGCCGTTGCTCTGCTTGT 135
|||||||| |||||||| ||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct 126 CTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCGGCTTGT 185
Query 136 GCTTATCCC-GCAGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCAATCCGTAGAAA 194
||||| ||| || ||||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 186 GCTTA-CCCAGCTGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCCATCAGGAGGAA 244
Query 195 GACTACTGGAACTGGAAGGATGAGGTATCTCCGCAATGTCCCTCG-CAGGTTCAAGACCG 253
||||||||| || |||||||||||||||||||| ||||| ||||| | |||||||||| |
Sbjct 245 GACTACTGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCTCGTC-GGTTCAAGACTG 303
Query 254 GTTTCAGAGAAGGTACCGAAGCCAAGCCAAGGAACAAGGCAGCAGCTTCATCAGCTTAAA 313
| |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 304 GATTCAGAGAAGGTACTGAAGCCAAGCCAAGGAGCAAGGCATCAGCTTCATCAGCTTAAA 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15683537688
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5